Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021119X
(561 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces... 44 2e-05
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce... 36 0.003
SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc... 28 0.82
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ... 27 1.4
SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3 |Schi... 27 2.5
SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4 |Schizosac... 26 3.3
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 25 5.8
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 25 5.8
SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70 |Schi... 25 5.8
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 25 7.6
>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 711
Score = 43.6 bits (98), Expect = 2e-05
Identities = 24/67 (35%), Positives = 43/67 (64%), Gaps = 4/67 (5%)
Frame = +3
Query: 261 LVSKEWLLAKLRSDERDTV----LIDCRGSNEYSVSHIRSAVNFSIPTIMLRRIAAGKIE 428
L+SK+ + L+S E T +ID R ++Y+VSHI++A+N S+PT +LRR + +
Sbjct: 4 LLSKDEFNSTLKSFEEQTESVSWIIDLRLHSKYAVSHIKNAINVSLPTALLRRPSFDIGK 63
Query: 429 LSSTVQC 449
+ + ++C
Sbjct: 64 VFACIKC 70
>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 550
Score = 36.3 bits (80), Expect = 0.003
Identities = 15/35 (42%), Positives = 25/35 (71%)
Frame = +3
Query: 309 DTVLIDCRGSNEYSVSHIRSAVNFSIPTIMLRRIA 413
DT++ID R +E+S S I+ +VN S+P +++R A
Sbjct: 53 DTLIIDLRPVSEFSKSRIKGSVNLSLPATLIKRPA 87
>SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase
Cdc25|Schizosaccharomyces pombe|chr 1|||Manual
Length = 596
Score = 28.3 bits (60), Expect = 0.82
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Frame = +3
Query: 264 VSKEWLLAKLRSDERDT----VLIDCRGSNEYSVSHIRSAVNFS 383
+++E LL L +D ++IDCR EY HI +AVN +
Sbjct: 413 ITQETLLGLLDGKFKDIFDKCIIIDCRFEYEYLGGHISTAVNLN 456
>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 315
Score = 27.5 bits (58), Expect = 1.4
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 273 EWLLAKLRSDERDTVLIDCRGSNEYSVSH 359
EWLL +L+ V+ DC G E +H
Sbjct: 86 EWLLKELKKHRDSYVIFDCPGQVELFTNH 114
>SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 192
Score = 26.6 bits (56), Expect = 2.5
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 156 CRY*CNRVFKVVKSPCKQKKTVYYQDAYGFRMRCD 260
CR C++ FK+ ++P K T Y+ A+G M D
Sbjct: 32 CRSKCHKNFKMKRNPRKVAWTKAYRKAHGKEMVYD 66
>SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 210
Score = 26.2 bits (55), Expect = 3.3
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 375 NFSIPTIMLRRIAAGKIELSSTVQCKELKAMIN 473
+ ++P ++ R+ G + S VQ + LKAMIN
Sbjct: 14 DLALPRSIIMRLVKGVLPEKSLVQKEALKAMIN 46
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 25.4 bits (53), Expect = 5.8
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +2
Query: 212 ENSVLSRCLWIQNAMRPGVERMAPC 286
E +++S + + ++ RP VER +PC
Sbjct: 20 ETTMVSPSIDVSSSPRPNVERFSPC 44
>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 25.4 bits (53), Expect = 5.8
Identities = 8/27 (29%), Positives = 17/27 (62%)
Frame = +2
Query: 77 LILFSTVFLNKCVFVNFVYIHYYRGCM 157
++LF+ V + +F+NF + + R C+
Sbjct: 23 ILLFALVIILSVIFINFFFFYLCRCCV 49
>SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 615
Score = 25.4 bits (53), Expect = 5.8
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 137 ECTQNLQKHTYLKKQ*KTKLSA 72
+C+QN+ TY K Q K+ +SA
Sbjct: 505 QCSQNMLDSTYTKSQNKSTMSA 526
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 25.0 bits (52), Expect = 7.6
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Frame = -2
Query: 257 ASHSESIGILIVHCFLLFTRTFYHFEYPVAS------IPTCNLDNNECTQNLQKHT 108
+S E +G+L H ++ +F F +AS I N+D +C Q L+ HT
Sbjct: 494 SSTGEVVGVLRGHRRGVWACSFNPFSRQLASGSGDRTIRIWNVDTQQCVQTLEGHT 549
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,377,323
Number of Sequences: 5004
Number of extensions: 49603
Number of successful extensions: 148
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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