Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021119X
         (561 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10701| Best HMM Match : DSPc (HMM E-Value=0)                        52   4e-07
SB_22563| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.85 
SB_54724| Best HMM Match : Rhodanese (HMM E-Value=0.69)                30   1.1  
SB_55579| Best HMM Match : Rhodanese (HMM E-Value=9.2e-29)             29   3.4  
SB_49801| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_25953| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_36627| Best HMM Match : ABC_tran (HMM E-Value=5.4e-06)              27   7.9  

>SB_10701| Best HMM Match : DSPc (HMM E-Value=0)
          Length = 365

 Score = 51.6 bits (118), Expect = 4e-07
 Identities = 23/56 (41%), Positives = 32/56 (57%)
 Frame = +3

Query: 318 LIDCRGSNEYSVSHIRSAVNFSIPTIMLRRIAAGKIELSSTVQCKELKAMINHCRT 485
           L+DCR    ++V+HIR AVN   P I+ RR+  G   LS+ V C E K ++    T
Sbjct: 66  LVDCRSFMAFNVAHIRGAVNIHCPPILKRRLLRGSATLSALVSCPESKVILEEADT 121


>SB_22563| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 374

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = +3

Query: 303 ERDTVLIDCRGSNEYSVSHIRSAVN 377
           ER  VL+D R  +E+SVSH+ +A++
Sbjct: 52  ERKLVLLDTRSKSEFSVSHLPNAIS 76


>SB_54724| Best HMM Match : Rhodanese (HMM E-Value=0.69)
          Length = 115

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 12/47 (25%), Positives = 26/47 (55%)
 Frame = +3

Query: 315 VLIDCRGSNEYSVSHIRSAVNFSIPTIMLRRIAAGKIELSSTVQCKE 455
           ++ID R   EY+ +H+ +++N     ++ RR+   KI +   ++  E
Sbjct: 21  LIIDSRSFLEYNDAHVINSINIGCSKLIKRRLITNKISIQELLKTGE 67


>SB_55579| Best HMM Match : Rhodanese (HMM E-Value=9.2e-29)
          Length = 269

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
 Frame = +3

Query: 300 DERDTV-LIDCRGSNEYSVSHIRSAVNFSIPTIMLRRIAAGKIELSSTVQCKELK--AMI 470
           DE D   +IDCR   E+   H++ A+N      ML+       +   T +CKE K   +I
Sbjct: 108 DEIDEYYIIDCRYPFEFDGGHVKGAINIYTKDEMLK-------QFIDTPKCKEGKRVVVI 160

Query: 471 NHC 479
            HC
Sbjct: 161 FHC 163


>SB_49801| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 102

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = +3

Query: 204 KQKKTVYYQDAYGFRMRC--DLVSKE 275
           KQ K  ++ D YGF+M C    VSKE
Sbjct: 12  KQPKINFWDDVYGFKMSCMKKTVSKE 37


>SB_25953| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 482

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 227 IVHCFLLFTRTFYHFEYPVASIPTCNLDNNECTQ 126
           I+HC    +    +  YP   + TC L+NN  TQ
Sbjct: 182 ILHCQATLSCFSINMHYPSDHVITCELNNNTYTQ 215


>SB_36627| Best HMM Match : ABC_tran (HMM E-Value=5.4e-06)
          Length = 240

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
 Frame = +3

Query: 264 VSKEWLLAKLRSDERDTVLIDCRGSNE-YSVSHIRSAVNFSIP----TIMLRRIAAGKIE 428
           V  E  L ++++DERDT ++  +  ++ Y  SHI   ++F +     T +L R   GK  
Sbjct: 65  VLAEGSLEQVQNDERDTDMLQVQQLHQYYGGSHILRGLSFDVKVGEVTCLLGRNGVGKTT 124

Query: 429 L 431
           L
Sbjct: 125 L 125


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,941,545
Number of Sequences: 59808
Number of extensions: 378976
Number of successful extensions: 951
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)