Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021119X
         (561 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23178-3|AAK68299.1|  657|Caenorhabditis elegans Vh1 dual-specif...    41   7e-04
AY585194-1|AAS91377.1|  657|Caenorhabditis elegans VH1-like phos...    41   7e-04
AF036685-1|AAB88308.2|  369|Caenorhabditis elegans Lateral-signa...    36   0.026
AF039048-1|AAB94237.2|  480|Caenorhabditis elegans Cell division...    33   0.11 
AF040643-8|AAQ65203.1|  180|Caenorhabditis elegans Hypothetical ...    29   2.3  
U88309-4|AAB42330.1|  256|Caenorhabditis elegans Hypothetical pr...    28   4.0  
AC006681-5|AAK85491.1|  225|Caenorhabditis elegans Hypothetical ...    28   4.0  
AL021488-1|CAB63369.1|  502|Caenorhabditis elegans Hypothetical ...    27   7.0  
AF038618-6|AAB92067.2|  402|Caenorhabditis elegans Hypothetical ...    27   7.0  
Z49907-3|CAA90085.1|  225|Caenorhabditis elegans Hypothetical pr...    27   9.2  
U41994-6|AAK31526.1| 1286|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AF106591-4|AAO61422.1| 1217|Caenorhabditis elegans Hypothetical ...    27   9.2  
AF039038-5|AAK29711.1|  604|Caenorhabditis elegans Cell division...    27   9.2  

>U23178-3|AAK68299.1|  657|Caenorhabditis elegans Vh1
           dual-specificity phosphatasefamily protein 1, isoform a
           protein.
          Length = 657

 Score = 40.7 bits (91), Expect = 7e-04
 Identities = 17/50 (34%), Positives = 30/50 (60%)
 Frame = +3

Query: 279 LLAKLRSDERDTVLIDCRGSNEYSVSHIRSAVNFSIPTIMLRRIAAGKIE 428
           L A +R     T+++DCRG  EY+ SH+R ++N     ++ RR+   K++
Sbjct: 14  LAALIREAPDTTLVVDCRGFTEYNESHVRHSMNAFFSKLIRRRLFENKLD 63


>AY585194-1|AAS91377.1|  657|Caenorhabditis elegans VH1-like
           phosphatase 1 protein.
          Length = 657

 Score = 40.7 bits (91), Expect = 7e-04
 Identities = 17/50 (34%), Positives = 30/50 (60%)
 Frame = +3

Query: 279 LLAKLRSDERDTVLIDCRGSNEYSVSHIRSAVNFSIPTIMLRRIAAGKIE 428
           L A +R     T+++DCRG  EY+ SH+R ++N     ++ RR+   K++
Sbjct: 14  LAALIREAPDTTLVVDCRGFTEYNESHVRHSMNAFFSKLIRRRLFENKLD 63


>AF036685-1|AAB88308.2|  369|Caenorhabditis elegans
           Lateral-signal-induced phosphataseprotein 1 protein.
          Length = 369

 Score = 35.5 bits (78), Expect = 0.026
 Identities = 15/59 (25%), Positives = 30/59 (50%)
 Frame = +3

Query: 303 ERDTVLIDCRGSNEYSVSHIRSAVNFSIPTIMLRRIAAGKIELSSTVQCKELKAMINHC 479
           ER+ +++DCR + +      R   +  +P ++ RR+  G + LS+    K+L    + C
Sbjct: 26  ERNVIVLDCRSNGDSVKRANRFFCSLRLPALLQRRLMGGSMRLSTVPDLKDLNNSPDQC 84


>AF039048-1|AAB94237.2|  480|Caenorhabditis elegans Cell division
           cycle related protein25.2 protein.
          Length = 480

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = +3

Query: 213 KTVYYQDAYGFRMRCDLVSKEWLLAKLRSDERDT--VLIDCRGSNEYSVSHIRSAVN 377
           KTV  + + GFR R    +   +  +L   E D   +LIDCR   EY+  HI++A+N
Sbjct: 213 KTVAKESSKGFR-RITAETLRDIFFRLSEKEFDDKYILIDCRYPYEYNRGHIKNAIN 268


>AF040643-8|AAQ65203.1|  180|Caenorhabditis elegans Hypothetical
           protein F14D2.14 protein.
          Length = 180

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = +3

Query: 171 NRVFKVVKSPCKQKKTVYYQDAYGFRMRCDLVSKEWLLAKLRSDE 305
           + V  +V S C + + V +QD  G R+R D ++K+ L+ K   D+
Sbjct: 83  DHVMSLVNS-CFKDRVVNFQDHQGLRLRTDNLAKQILVKKCCRDD 126


>U88309-4|AAB42330.1|  256|Caenorhabditis elegans Hypothetical
           protein T23B3.3 protein.
          Length = 256

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 246 RMRCDLVSKEWLLAKLRSDERDTVLIDCRGSNEYSVSHI 362
           ++ C    KE L   L  + +DT L+  RG  +YSV+ +
Sbjct: 152 KLECSKKFKELLDKALAKEPKDTALLHLRGRYKYSVASL 190


>AC006681-5|AAK85491.1|  225|Caenorhabditis elegans Hypothetical
           protein R13H9.1 protein.
          Length = 225

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 246 RMRCDLVSKEWLLAKLRSDERDTVLIDCRGSNEYSVSHI 362
           ++ C    KE L   L  + +DT L+  RG  +YSV+ +
Sbjct: 99  KLECSKKFKELLDKALAKEPKDTALLHLRGRYKYSVASL 137


>AL021488-1|CAB63369.1|  502|Caenorhabditis elegans Hypothetical
           protein Y45F10A.2 protein.
          Length = 502

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -3

Query: 334 PRQSINTVSLSSERNFARSHSFDTRSHRILNP 239
           P+Q++  + L +  +F++S +  TRSH+   P
Sbjct: 90  PQQAVRLIDLENNASFSKSLNSTTRSHKCTLP 121


>AF038618-6|AAB92067.2|  402|Caenorhabditis elegans Hypothetical
           protein F42G8.6 protein.
          Length = 402

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +3

Query: 303 ERDTVLIDCRGSNEYSVSHIRSAVNFSI 386
           E+  VL+D R S E+ ++H+  A+N ++
Sbjct: 303 EQKPVLLDTRPSLEFEIAHLPEAINVTL 330


>Z49907-3|CAA90085.1|  225|Caenorhabditis elegans Hypothetical
           protein B0491.3 protein.
          Length = 225

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 246 RMRCDLVSKEWLLAKLRSDERDTVLIDCRGSNEYSVSHI 362
           ++ C    KE L   L  + +DT ++  RG  +YSV+ +
Sbjct: 99  KLECSKKFKELLDKTLAKEPKDTAVLHLRGRYKYSVASL 137


>U41994-6|AAK31526.1| 1286|Caenorhabditis elegans Hypothetical protein
            F59A6.5 protein.
          Length = 1286

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +2

Query: 230  RCLWIQNAMRPGVERMAPCEVTFRRKRHRID-RLSGLKRVFCI 355
            RCL+I    +P   R A C  T +RKR  ++ + S +    C+
Sbjct: 916  RCLYILAPSQPSARRWAECLQTAQRKRMMLNSKESSIAEFTCL 958


>AF106591-4|AAO61422.1| 1217|Caenorhabditis elegans Hypothetical
           protein T01A4.1a protein.
          Length = 1217

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 9/25 (36%), Positives = 12/25 (48%)
 Frame = -2

Query: 176 PVASIPTCNLDNNECTQNLQKHTYL 102
           P   +P C  D ++C Q    H YL
Sbjct: 448 PPTDLPICGYDKSKCPQGYPLHVYL 472


>AF039038-5|AAK29711.1|  604|Caenorhabditis elegans Cell division
           cycle related protein25.1 protein.
          Length = 604

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +3

Query: 303 ERDTVLIDCRGSNEYSVSHIRSAVN 377
           ++  +++DCR   EY   H++ A+N
Sbjct: 306 DKKYIIVDCRFPFEYKGGHVKGAIN 330


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,166,071
Number of Sequences: 27780
Number of extensions: 276118
Number of successful extensions: 807
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)