Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021119X
         (561 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27120.1 68418.m03237 SAR DNA-binding protein, putative stron...    29   2.1  
At4g30760.2 68417.m04359 expressed protein contains Pfam profile...    27   6.5  
At4g30760.1 68417.m04358 expressed protein contains Pfam profile...    27   6.5  
At3g50080.1 68416.m05475 F-box family protein (FBL16) contains s...    27   8.6  

>At5g27120.1 68418.m03237 SAR DNA-binding protein, putative strong
           similarity to SAR DNA-binding protein-1 [Pisum sativum]
           GI:3132696; contains Pfam profile PF01798: Putative
           snoRNA binding domain
          Length = 533

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 502 NTNIPRVRQWFIIAFNSLHCTVDDNSIFPAAIRL 401
           NT   RVR+WF   F  L   V DN ++  A++L
Sbjct: 175 NTYAMRVREWFGWHFPELAKIVQDNILYAKAVKL 208


>At4g30760.2 68417.m04359 expressed protein contains Pfam profile
           PF04396: Protein of unknown function, DUF537
          Length = 190

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -3

Query: 424 IFPAAIRLSIIVGMEKFTAERMCDTEYSFEPRQSINTVSLSSERNFA 284
           + P +IR  I+  ++K+     CD E S     + NTVS++  R F+
Sbjct: 35  LHPRSIRRRIVKDVKKYG----CDAEVSIHAYANDNTVSVTMRRQFS 77


>At4g30760.1 68417.m04358 expressed protein contains Pfam profile
           PF04396: Protein of unknown function, DUF537
          Length = 191

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -3

Query: 424 IFPAAIRLSIIVGMEKFTAERMCDTEYSFEPRQSINTVSLSSERNFA 284
           + P +IR  I+  ++K+     CD E S     + NTVS++  R F+
Sbjct: 35  LHPRSIRRRIVKDVKKYG----CDAEVSIHAYANDNTVSVTMRRQFS 77


>At3g50080.1 68416.m05475 F-box family protein (FBL16) contains
           similarity to SKP1 interacting partner 2 GI:10716949
           from [Arabidopsis thaliana]; contains Pfam profile:
           PF00646 F-box domain
          Length = 522

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +3

Query: 240 GFRMRCDLVSKEWLL 284
           G R RC LVSK WLL
Sbjct: 59  GDRKRCSLVSKRWLL 73


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,120,229
Number of Sequences: 28952
Number of extensions: 245296
Number of successful extensions: 597
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)