Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021118
(724 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 139 4e-34
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 91 1e-19
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 82 7e-17
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 66 4e-12
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 61 1e-10
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 49 8e-07
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 48 1e-06
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 46 4e-06
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 27 2.7
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 4.7
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 26 6.3
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 139 bits (336), Expect = 4e-34
Identities = 63/72 (87%), Positives = 65/72 (90%)
Frame = -1
Query: 724 KSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANT 545
KSYELPDGQVITIGNERFR PEALFQPS LG+E GIHE TYNSIMKCDVDIRKDLY N
Sbjct: 238 KSYELPDGQVITIGNERFRAPEALFQPSALGLENAGIHEATYNSIMKCDVDIRKDLYGNV 297
Query: 544 VLSGGTTMYPGI 509
V+SGGTTMYPGI
Sbjct: 298 VMSGGTTMYPGI 309
Score = 129 bits (312), Expect = 3e-31
Identities = 59/69 (85%), Positives = 63/69 (91%)
Frame = -3
Query: 518 PWNPDRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSIXASLSTFQQMWISKQEYDESG 339
P DRMQKEI ALAPS+MK+KI+APPERKYSVWIGGSI ASLSTFQQMWISKQEYDESG
Sbjct: 307 PGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 366
Query: 338 PSIVHRKCF 312
P IV+RKCF
Sbjct: 367 PGIVYRKCF 375
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 91.1 bits (216), Expect = 1e-19
Identities = 39/74 (52%), Positives = 54/74 (72%)
Frame = -1
Query: 724 KSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANT 545
++Y LPDG+VI +G+ER+ CPE LFQP +G E G+ E +++I DVDIRK LY
Sbjct: 238 RNYTLPDGRVIKVGSERYECPECLFQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYRAI 297
Query: 544 VLSGGTTMYPGIPT 503
VLSGG++MY G+P+
Sbjct: 298 VLSGGSSMYAGLPS 311
Score = 39.9 bits (89), Expect = 4e-04
Identities = 17/42 (40%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Frame = -3
Query: 461 KIKIIAPPERKYSVWIGGSIXAS-LSTFQQMWISKQEYDESG 339
K+KI P R+++V+IGG++ A ++ MW+SK E++E G
Sbjct: 337 KVKIEDAPRRRHAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 82.2 bits (194), Expect = 7e-17
Identities = 35/70 (50%), Positives = 47/70 (67%)
Frame = -1
Query: 721 SYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTV 542
+Y+LPD Q IT+G E F PE LF P +G EA G+H + SI+ D+D+R LY+N V
Sbjct: 244 TYQLPDNQTITLGTECFSAPEVLFNPEMMGSEASGLHIQLFKSILLSDIDLRSTLYSNIV 303
Query: 541 LSGGTTMYPG 512
LSGG+T+ G
Sbjct: 304 LSGGSTLLRG 313
Score = 56.8 bits (131), Expect = 3e-09
Identities = 25/65 (38%), Positives = 45/65 (69%)
Frame = -3
Query: 506 DRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSIXASLSTFQQMWISKQEYDESGPSIV 327
+R E+ A++ ++KI A PER ++ W+GGSI ASLSTF+++ I+ +EY ++ +++
Sbjct: 316 ERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITSEEY-KNDQNVI 374
Query: 326 HRKCF 312
R+ F
Sbjct: 375 FRRRF 379
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 66.5 bits (155), Expect = 4e-12
Identities = 33/81 (40%), Positives = 44/81 (54%), Gaps = 9/81 (11%)
Frame = -1
Query: 724 KSYELPDGQVITIGNERFRCPEALFQPSFLGMEAC---------GIHETTYNSIMKCDVD 572
K +E PDG G ERFR E LF PSF + G+HE Y SI+ CD +
Sbjct: 279 KPFEFPDGVTHKFGQERFRISEILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSE 338
Query: 571 IRKDLYANTVLSGGTTMYPGI 509
+R L N V++GGT++ PG+
Sbjct: 339 LRSPLLNNIVVTGGTSLIPGL 359
Score = 52.8 bits (121), Expect = 5e-08
Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Frame = -3
Query: 521 VPWNPDRMQKEITALAP-STMKIKIIAPPER-KYSVWIGGSIXASLSTFQQMWISKQEYD 348
+P +R+Q E+ LA S + + +VW GGSI ASL FQ +W+SKQEYD
Sbjct: 356 IPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLDNFQHLWVSKQEYD 415
Query: 347 ESG 339
E G
Sbjct: 416 EVG 418
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 61.3 bits (142), Expect = 1e-10
Identities = 30/69 (43%), Positives = 47/69 (68%), Gaps = 6/69 (8%)
Frame = -3
Query: 503 RMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSIXASLSTFQQMWISKQEYDESGP- 336
R+Q E++ L P + ++KI A ER Y+ W+GGSI +SL TF Q+WIS+QEY+E G
Sbjct: 365 RLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSD 423
Query: 335 --SIVHRKC 315
+++ ++C
Sbjct: 424 RLALIEKRC 432
Score = 37.1 bits (82), Expect(2) = 1e-06
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = -1
Query: 619 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPG 512
GI + N I +CDVDIR L N ++ GGT++ G
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQG 361
Score = 30.7 bits (66), Expect(2) = 1e-06
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 718 YELPDGQVITIGNERFRCPEALFQP 644
+E PDG + G ER++ PE LF P
Sbjct: 264 FEFPDGSRMMFGAERYQIPEHLFVP 288
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 48.8 bits (111), Expect = 8e-07
Identities = 24/63 (38%), Positives = 32/63 (50%)
Frame = -1
Query: 700 QVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTM 521
QV+ + NERF PE LF PS + + GI E S+ +I+ L N V GG
Sbjct: 272 QVLNLSNERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCK 331
Query: 520 YPG 512
+PG
Sbjct: 332 FPG 334
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 48.0 bits (109), Expect = 1e-06
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = -1
Query: 694 ITIGNERFRCPEALFQPSFLGME-ACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMY 518
I +G ERF PE F P + + E N + +D+RK LY N VLSGG+T++
Sbjct: 280 IDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLF 339
Score = 35.5 bits (78), Expect = 0.008
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = -3
Query: 458 IKIIAPPERKYSVWIGGSIXASLSTFQQMWISKQEYDESGPSIVHR 321
+ +I+ ++ +VW GGS+ A F +K +Y+E G SI R
Sbjct: 374 VNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 46.4 bits (105), Expect = 4e-06
Identities = 20/64 (31%), Positives = 38/64 (59%)
Frame = -1
Query: 679 ERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIPTV 500
E+ R PE +F PS +G++ GI E + + + ++ ++ L +N +++GG PG+ T
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETR 653
Query: 499 CKRK 488
KR+
Sbjct: 654 IKRE 657
Score = 34.3 bits (75), Expect = 0.018
Identities = 15/65 (23%), Positives = 30/65 (46%)
Frame = -3
Query: 521 VPWNPDRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSIXASLSTFQQMWISKQEYDES 342
+P R+++E+T++ P I + W G S + F+ ++++EY E
Sbjct: 647 LPGMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEK 706
Query: 341 GPSIV 327
GP +
Sbjct: 707 GPEYI 711
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.1 bits (57), Expect = 2.7
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = -3
Query: 419 WIGGSIXASLSTFQQM---WISKQEYDESGPSIVHRK 318
++GGSI A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 427 TPYGSVDRSXPPSLPSNRCGSRNRSTTSLAPP 332
TP + PPS+PS+R R S ++ APP
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPP 254
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/64 (18%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Frame = -3
Query: 500 MQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSIXASLSTFQQMWISKQEYDESGPSI 330
+++ I + + I +I PP + ++ W G I + ++WI ++ G +
Sbjct: 549 LEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYNRIRIVSELWIKNSDWKMLGSRV 608
Query: 329 VHRK 318
+ K
Sbjct: 609 LQYK 612
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,761,038
Number of Sequences: 5004
Number of extensions: 56494
Number of successful extensions: 177
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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