Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021117
(817 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1133 - 26368323-26369457,26369556-26369635,26370145-263702... 97 1e-20
03_05_0491 - 24868261-24869383,24869482-24869561,24870193-248702... 97 1e-20
03_02_1011 + 13198641-13198899,13199471-13199604,13199805-131999... 58 6e-09
01_04_0053 - 15444421-15444747,15444905-15445116,15445198-154453... 57 2e-08
05_04_0401 - 20982923-20983106,20983129-20983186,20983322-209835... 40 0.002
10_08_1002 + 22160109-22160264,22160374-22160484,22160612-221606... 33 0.21
11_04_0165 + 14305885-14306007,14306538-14306642,14306792-143068... 31 1.4
11_04_0112 - 13585293-13585988,13586095-13586619 29 5.8
07_01_0635 + 4753919-4754090,4754200-4754258,4754377-4754432,475... 28 7.7
06_02_0200 - 12946139-12946282,12947636-12947842,12949506-129496... 28 7.7
>12_02_1133 -
26368323-26369457,26369556-26369635,26370145-26370201,
26370508-26370601,26371006-26371092,26371179-26371268,
26371396-26371649
Length = 598
Score = 97.5 bits (232), Expect = 1e-20
Identities = 41/81 (50%), Positives = 64/81 (79%), Gaps = 2/81 (2%)
Frame = +2
Query: 512 VTPYERNLELWKQLWRTLEKSDIVLILLDARDPLLFRCVDLEKYAKE--QKCQSILLLNK 685
+TP+E+N+++W+QLWR LE+SD++++++DARDPL +RC DLE YAKE + ++++L+NK
Sbjct: 153 LTPFEKNIDIWRQLWRVLERSDLLVMVVDARDPLFYRCPDLEVYAKEIDEHKRTMILVNK 212
Query: 686 ADLTSEYERKCWAEYFNKGNI 748
ADL RK WA+YF +I
Sbjct: 213 ADLLPMNIRKKWADYFKAHDI 233
Score = 44.8 bits (101), Expect = 8e-05
Identities = 20/37 (54%), Positives = 23/37 (62%)
Frame = +3
Query: 384 LTVPRRPQWNPGVTAEEQLNRERETFLDWRRHLNELQ 494
L VPRRP WN +T EE ER FL WRR+L L+
Sbjct: 110 LRVPRRPPWNSRMTVEELDENERRAFLVWRRNLARLE 146
>03_05_0491 -
24868261-24869383,24869482-24869561,24870193-24870249,
24870567-24870660,24871013-24871099,24871188-24871347,
24871440-24871674
Length = 611
Score = 97.5 bits (232), Expect = 1e-20
Identities = 41/81 (50%), Positives = 65/81 (80%), Gaps = 2/81 (2%)
Frame = +2
Query: 512 VTPYERNLELWKQLWRTLEKSDIVLILLDARDPLLFRCVDLEKYAKE--QKCQSILLLNK 685
+TP+E+N+++W+QLWR LE+SD++++++DARDPL +RC DLE YA+E + +++LL+NK
Sbjct: 170 LTPFEKNIDIWRQLWRVLERSDLLVMVVDARDPLFYRCPDLEVYAQEIDEHKRTLLLVNK 229
Query: 686 ADLTSEYERKCWAEYFNKGNI 748
ADL R+ WAEYF + +I
Sbjct: 230 ADLLPLNVRQRWAEYFKQHDI 250
Score = 45.6 bits (103), Expect = 5e-05
Identities = 19/37 (51%), Positives = 24/37 (64%)
Frame = +3
Query: 384 LTVPRRPQWNPGVTAEEQLNRERETFLDWRRHLNELQ 494
L VPRRP W P +T EE E+ FL+WRR+L L+
Sbjct: 127 LKVPRRPPWTPQMTVEELDANEKRAFLEWRRNLARLE 163
>03_02_1011 +
13198641-13198899,13199471-13199604,13199805-13199934,
13200290-13200450,13200587-13200688,13200786-13200890,
13200965-13201093,13201180-13201320,13201855-13201955,
13202300-13202357,13202656-13202943
Length = 535
Score = 58.4 bits (135), Expect = 6e-09
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Frame = +2
Query: 539 LWKQLWRTLEKSDIVLILLDARDPLLFRCVDLEKYAKEQKCQS--ILLLNKADLTSEYER 712
+W +L++ ++ SD+V+ +LDARDP+ RC LEK+ KE + LLNK DL +
Sbjct: 212 IWGELYKVIDSSDVVVQVLDARDPMGTRCYHLEKHLKENAKHKHLVFLLNKCDLVPAWAT 271
Query: 713 KCWAEYFNK 739
K W +K
Sbjct: 272 KGWLRTLSK 280
>01_04_0053 -
15444421-15444747,15444905-15445116,15445198-15445377,
15445572-15445836,15446308-15446522,15446611-15446784,
15446872-15447010,15447523-15447786
Length = 591
Score = 56.8 bits (131), Expect = 2e-08
Identities = 27/68 (39%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Frame = +2
Query: 542 WKQLWRTLEKSDIVLILLDARDPLLFRCVDLEKYAK--EQKCQSILLLNKADLTSEYERK 715
+K+L + +E SD++L +LDARDPL RC+D+EK + + + +LLLNK DL + +
Sbjct: 142 YKELVKVIEASDVILEVLDARDPLGTRCIDMEKMVRKADPSKRIVLLLNKIDLVPKESVE 201
Query: 716 CWAEYFNK 739
W Y +
Sbjct: 202 KWLTYLRE 209
>05_04_0401 -
20982923-20983106,20983129-20983186,20983322-20983503,
20983637-20983752,20984148-20984234,20984334-20984477,
20984556-20984672,20984790-20984936,20985717-20985938,
20986919-20987072,20987583-20987632,20987870-20987921,
20987985-20988211
Length = 579
Score = 40.3 bits (90), Expect = 0.002
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Frame = +2
Query: 545 KQLWRTLEKSDIVLILLDARDPLLFRCVDLEKYAKEQKCQSILLLNKADLTSEYERKCWA 724
K+L L+ D+V+ + DAR PL ++ + +K I+++N+ D+ S +R WA
Sbjct: 295 KELKEQLKLMDVVIEVRDARIPLATSHPKMDAWLGNRK--RIIVMNREDMVSNEDRNAWA 352
Query: 725 EYF-NKG 742
YF N+G
Sbjct: 353 SYFANQG 359
>10_08_1002 +
22160109-22160264,22160374-22160484,22160612-22160689,
22160774-22160921,22161007-22161077,22161430-22161526,
22161603-22161790,22161960-22162223
Length = 370
Score = 33.5 bits (73), Expect = 0.21
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +2
Query: 575 DIVLILLDARDPLLFRCVDLEKYAKEQKCQSILLLNKADLTSEYERKCWAEYFNK 739
D+VL + DAR P L + + E + +++LNKADL + + W Y +
Sbjct: 43 DLVLEVRDARVPAASAFAPLRRRSPEPDRRRLVVLNKADLADPSQTEKWMAYMKQ 97
>11_04_0165 +
14305885-14306007,14306538-14306642,14306792-14306869,
14307710-14307757,14308173-14308314,14308394-14308464,
14309210-14309306,14309517-14309728,14311995-14312267
Length = 382
Score = 30.7 bits (66), Expect = 1.4
Identities = 20/57 (35%), Positives = 29/57 (50%)
Frame = +2
Query: 563 LEKSDIVLILLDARDPLLFRCVDLEKYAKEQKCQSILLLNKADLTSEYERKCWAEYF 733
L+ +D+VL + DAR PL DL+ ++ IL LNK DL + W +F
Sbjct: 28 LKLADLVLEVRDARIPLSSANEDLQPVLASKR--RILALNKKDLANPNIMNRWLHHF 82
>11_04_0112 - 13585293-13585988,13586095-13586619
Length = 406
Score = 28.7 bits (61), Expect = 5.8
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 11/74 (14%)
Frame = -3
Query: 212 QSYPSFTSVVWSMVLSSTCFLLRFL--------ENLSLMRALPR---DSLFFLPIILTYT 66
+S+PSF + S+ LS C LL F +N S+ A R L+ L ++LT
Sbjct: 283 RSWPSFIIAMHSLWLSLICMLLAFFISIIAVMDKNNSIRIAPTRVMYHGLYILMMMLTKA 342
Query: 65 TKQGEIQLPLTFLI 24
T G ++ L FLI
Sbjct: 343 TMPGSVKGILMFLI 356
>07_01_0635 +
4753919-4754090,4754200-4754258,4754377-4754432,
4754698-4754842,4755506-4755580,4755844-4755933,
4756218-4756295,4757879-4758376,4758512-4758997
Length = 552
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +2
Query: 527 RNLELWKQLWRTLEKSDIVLILLDARD-PLLFRCVDLEKYAKEQKCQSILLLNK 685
++ ++WK+ + L+ D ++ LDAR+ + RC E++ +E K Q L L K
Sbjct: 332 KSKKIWKKNKQDLDAIDERVLALDAREAEMATRCQGFEQFMEEMK-QLTLQLQK 384
>06_02_0200 - 12946139-12946282,12947636-12947842,12949506-12949629,
12950167-12950369,12950922-12951620,12951723-12951784,
12952395-12952404,12954905-12957631
Length = 1391
Score = 28.3 bits (60), Expect = 7.7
Identities = 18/46 (39%), Positives = 23/46 (50%)
Frame = -1
Query: 367 GCDVTMATSLGTDFTYFRLSFSAVNSLCASSAVERNS*VKTPQSLT 230
G + T LGTD T+F LS C SSA N+ KT ++T
Sbjct: 1059 GMESTWKVCLGTDMTHF-LSDVLFQIECLSSAPSNNAVYKTAVAVT 1103
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,313,736
Number of Sequences: 37544
Number of extensions: 403736
Number of successful extensions: 1105
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1101
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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