Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021117
         (817 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    24   1.9  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   5.9  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   7.8  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +2

Query: 572 SDIVLILLDARDPLLFRCVDLEKYAKEQKCQSILLLNKAD 691
           +DIV++++ A D +  + +   + AK+ K   I+ +NK D
Sbjct: 217 TDIVVLVVAADDGVKEQTLQSIEMAKDAKVPIIVAINKID 256


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = -3

Query: 599 HLTISIQYQIFLKSSITASKVPSFSHKV 516
           HL+  +++ + LK ++++    SF+H V
Sbjct: 866 HLSTLVEFALELKKALSSINEQSFNHFV 893


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 219 FESPVSDCGVFTQEFLSTAELAQREFTA 302
           FE P     ++T+EFLST      +F A
Sbjct: 19  FEEPSVMLKIWTEEFLSTILRLDPKFIA 46


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,022
Number of Sequences: 438
Number of extensions: 4415
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)