Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021117
(817 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g27200.1 68415.m03269 GTP-binding family protein contains Pfa... 107 9e-24
At1g08410.1 68414.m00930 GTP-binding family protein contains Pfa... 99 2e-21
At1g52980.1 68414.m05995 GTP-binding family protein contains Pfa... 56 4e-08
At3g07050.1 68416.m00837 GTP-binding family protein contains Pfa... 52 5e-07
At4g02790.1 68417.m00379 GTP-binding family protein contains Pfa... 43 2e-04
At2g41670.1 68415.m05148 GTP-binding family protein contains Pfa... 31 0.91
At4g10650.1 68417.m01739 GTP-binding family protein contains Pfa... 31 1.2
At3g54280.1 68416.m05999 SNF2 domain-containing protein / helica... 30 1.6
At2g44240.1 68415.m05505 expressed protein contains Pfam profil... 29 2.8
At1g03160.1 68414.m00293 GTP-binding protein-related contains TI... 29 3.7
At1g02370.1 68414.m00183 pentatricopeptide (PPR) repeat-containi... 29 3.7
At5g08270.1 68418.m00974 expressed protein 28 6.4
At1g20240.1 68414.m02528 hypothetical protein 28 6.4
>At2g27200.1 68415.m03269 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 537
Score = 107 bits (257), Expect = 9e-24
Identities = 44/81 (54%), Positives = 67/81 (82%), Gaps = 2/81 (2%)
Frame = +2
Query: 512 VTPYERNLELWKQLWRTLEKSDIVLILLDARDPLLFRCVDLEKYAKE--QKCQSILLLNK 685
+TP+E+NL++W+QLWR LE+SD++++++DARDPL +RC DLE YA+E + +++LL+NK
Sbjct: 148 LTPFEKNLDIWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAQEIDEHKKTMLLVNK 207
Query: 686 ADLTSEYERKCWAEYFNKGNI 748
ADL Y R+ WAEYF++ NI
Sbjct: 208 ADLLPSYVREKWAEYFSRNNI 228
Score = 41.1 bits (92), Expect = 9e-04
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = +3
Query: 384 LTVPRRPQWNPGVTAEEQLNRERETFLDWRRHLNELQ 494
L VPRRP W P + E+ E++ FL WRR L L+
Sbjct: 105 LQVPRRPHWTPKMNVEKLDANEKQAFLTWRRKLASLE 141
>At1g08410.1 68414.m00930 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 589
Score = 99 bits (238), Expect = 2e-21
Identities = 43/81 (53%), Positives = 63/81 (77%), Gaps = 2/81 (2%)
Frame = +2
Query: 512 VTPYERNLELWKQLWRTLEKSDIVLILLDARDPLLFRCVDLEKYAKE--QKCQSILLLNK 685
+TP+E+NL++W+QLWR LE+SD++++++DARDPL +RC DLE YA+E + + +LL+NK
Sbjct: 148 LTPFEKNLDIWRQLWRVLERSDLIVMVVDARDPLFYRCPDLEAYAQEIDEHKKIMLLVNK 207
Query: 686 ADLTSEYERKCWAEYFNKGNI 748
ADL R+ WAEYF NI
Sbjct: 208 ADLLPTDVREKWAEYFRLNNI 228
Score = 42.7 bits (96), Expect = 3e-04
Identities = 18/37 (48%), Positives = 24/37 (64%)
Frame = +3
Query: 384 LTVPRRPQWNPGVTAEEQLNRERETFLDWRRHLNELQ 494
L VPRRP W P ++ EE E++ FL+WRR L L+
Sbjct: 105 LQVPRRPPWTPEMSVEELDANEKQAFLNWRRMLVSLE 141
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 7/47 (14%)
Frame = +1
Query: 82 MGKKNKESLGRALIKD-----RFSKNRNK--KHVEDNTMLHTTEVND 201
MGK K SLGR+L+K + SK++ K K+++ + TEV+D
Sbjct: 1 MGKSEKTSLGRSLVKHHNHMIQESKDKGKYYKNLQKKVLESVTEVSD 47
>At1g52980.1 68414.m05995 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 576
Score = 55.6 bits (128), Expect = 4e-08
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Frame = +2
Query: 539 LWKQLWRTLEKSDIVLILLDARDPLLFRCVDLEKYAKE--QKCQSILLLNKADLTSEYER 712
+W +L++ ++ SD+++ ++DARDP RC LEK KE + ILLLNK DL +
Sbjct: 205 IWGELYKVIDSSDVIVQVIDARDPQGTRCHHLEKTLKEHHKHKHMILLLNKCDLVPAWAT 264
Query: 713 KCWAEYFNK 739
K W +K
Sbjct: 265 KGWLRVLSK 273
>At3g07050.1 68416.m00837 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 582
Score = 52.0 bits (119), Expect = 5e-07
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Frame = +2
Query: 542 WKQLWRTLEKSDIVLILLDARDPLLFRCVDLEKYAKE--QKCQSILLLNKADLTSEYERK 715
+K+L + +E SD++L +LDARDPL RC D+E+ + +LLLNK DL +
Sbjct: 127 YKELVKVIELSDVILEVLDARDPLGTRCTDMERMVMQAGPNKHLVLLLNKIDLVPREAAE 186
Query: 716 CWAEYFNK 739
W Y +
Sbjct: 187 KWLMYLRE 194
>At4g02790.1 68417.m00379 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 372
Score = 43.2 bits (97), Expect = 2e-04
Identities = 25/76 (32%), Positives = 41/76 (53%)
Frame = +2
Query: 545 KQLWRTLEKSDIVLILLDARDPLLFRCVDLEKYAKEQKCQSILLLNKADLTSEYERKCWA 724
K+L L+ D+V+ + DAR PL ++ + +K IL+LN+ D+ S +R WA
Sbjct: 108 KELREQLKLMDVVIEVRDARIPLSTTHPKMDAWLGNRK--RILVLNREDMISNDDRNDWA 165
Query: 725 EYFNKGNIRISLFFGR 772
YF K I++ G+
Sbjct: 166 RYFAKQGIKVIFTNGK 181
>At2g41670.1 68415.m05148 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 386
Score = 31.1 bits (67), Expect = 0.91
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = +2
Query: 563 LEKSDIVLILLDARDPLLFRCVDLEKYAKEQKCQSILLLNKADLTSEYERKCWAEYF 733
L+ SD+V+ + DAR PL DL+ ++ I+ LNK DL + W +F
Sbjct: 44 LKLSDLVIEVRDARIPLSSANEDLQSQMSAKR--RIIALNKKDLANPNVLNKWTRHF 98
>At4g10650.1 68417.m01739 GTP-binding family protein contains Pfam
domain, PF01926: GTPase of unknown function
Length = 332
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/57 (35%), Positives = 29/57 (50%)
Frame = +2
Query: 575 DIVLILLDARDPLLFRCVDLEKYAKEQKCQSILLLNKADLTSEYERKCWAEYFNKGN 745
D VL + DAR PL L K++ + I++LNK +L E K +YF + N
Sbjct: 48 DFVLEIRDARIPLSSEYELLRKFSPLPS-KRIIVLNKMELADPLELKKCIDYFEERN 103
>At3g54280.1 68416.m05999 SNF2 domain-containing protein / helicase
domain-containing protein similar to SP|O14981
TBP-associated factor 172 (TAF-172) (TAF(II)170) {Homo
sapiens}; contains PFam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 2049
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Frame = +1
Query: 136 SKNRNKKHVEDNTMLHTTEVNDGYD----WGRLNLQSVTAESSLKNFSPQLN-WHRESS 297
S+ K E + +LHT E +D +LN++SVTA+ ++ +F+ L+ W++ES+
Sbjct: 990 SRTYTKMRNEASQLLHTVETCHCFDKLLSTNKLNVESVTADETI-DFASTLDLWNKESA 1047
>At2g44240.1 68415.m05505 expressed protein contains Pfam profile
PF03080: Arabidopsis proteins of unknown function
Length = 402
Score = 29.5 bits (63), Expect = 2.8
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 11/86 (12%)
Frame = +3
Query: 255 QEFLSTAELAQREFTAEKLNLKYVKSVPSE------VAIVTSQPDFDEPL----TVPRRP 404
+EF E+ + F ++LN +KS+ SE ++TSQP FD PL T+ +P
Sbjct: 25 KEFFHHREIKVQRFL-KQLNKPALKSIKSEDGDIIDCVLITSQPAFDHPLLKNHTIQVKP 83
Query: 405 QWNP-GVTAEEQLNRERETFLDWRRH 479
+ P G +E + W+++
Sbjct: 84 SFIPEGEGDSTYTKKETKATQVWQKY 109
>At1g03160.1 68414.m00293 GTP-binding protein-related contains
TIGRFAM TIGR00650: GTP-binding conserved hypothetical
protein domain; contains TIGRFAM TIGR00231: small
GTP-binding protein domain; similar to mitofusin 1
precursor (GI:12744896) [Homo sapiens]
Length = 642
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/61 (27%), Positives = 32/61 (52%)
Frame = +2
Query: 569 KSDIVLILLDARDPLLFRCVDLEKYAKEQKCQSILLLNKADLTSEYERKCWAEYFNKGNI 748
++D+++ +L A PL V +Y ++ K + + +LNK+D+ + A F K N
Sbjct: 447 RADLLVFVLSADRPLTESEVAFLRYTQQWKKKFVFILNKSDIYRDARELEEAISFVKENT 506
Query: 749 R 751
R
Sbjct: 507 R 507
>At1g02370.1 68414.m00183 pentatricopeptide (PPR) repeat-containing
protein low similarity to DNA-binding protein [Triticum
aestivum] GI:6958202; contains Pfam profile PF01535: PPR
repeat
Length = 537
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 698 SEYERKCWAEYFNKGNIRISLFFGRQNYE*AQNI 799
+E+E KCWA NI I+ + YE A+ I
Sbjct: 372 TEWESKCWAYDMRLANIAINTYLKGNMYEEAEKI 405
>At5g08270.1 68418.m00974 expressed protein
Length = 386
Score = 28.3 bits (60), Expect = 6.4
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Frame = +2
Query: 509 AVTPYERNLELWKQLWRTLEKSDIVLILLDARDPLLFRCVDLEKYAKEQKCQSILLLNKA 688
A T + ++WK L R LE S V +++ R+PL F + KE + ++++
Sbjct: 246 ATTTENSSDKVWKMLSRPLEGSGGVEAVIEMRNPLAFGHF-INHPGKEME-SNVMICPYD 303
Query: 689 DLTSEYERKCW---AEYFNKGNIRISLF 763
L SE E + + + N G++++ F
Sbjct: 304 FLLSETEMRAYIPNVAFGNTGDVKMGRF 331
>At1g20240.1 68414.m02528 hypothetical protein
Length = 566
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/66 (27%), Positives = 36/66 (54%)
Frame = +1
Query: 79 IMGKKNKESLGRALIKDRFSKNRNKKHVEDNTMLHTTEVNDGYDWGRLNLQSVTAESSLK 258
+ G++ +G + +R +K + + +++ E++DGY W RL+ +VTA SS
Sbjct: 319 VAGRERGMCVGFTVNGNRTTKRFKIVCIHEMGTVYSFELSDGYSW-RLSETTVTA-SSKS 376
Query: 259 NFSPQL 276
N + Q+
Sbjct: 377 NLTVQM 382
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,136,274
Number of Sequences: 28952
Number of extensions: 353187
Number of successful extensions: 1074
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1863090400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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