Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021116
         (799 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    36   0.005
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    31   0.19 
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    29   0.77 
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1...    27   4.1  
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2...    27   4.1  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    26   5.4  
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch...    26   5.4  
SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr 3|||M...    26   7.2  
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch...    26   7.2  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    25   9.5  
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    25   9.5  

>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 36.3 bits (80), Expect = 0.005
 Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 4/117 (3%)
 Frame = -2

Query: 648 YSNIFLTRSDAKHNDASNISCDNIATLTACLTTFR--NVATNVPARSRY--NSILTYFLV 481
           Y N+ L      +N AS  + D+        +TF   N   N+     Y   S+L     
Sbjct: 360 YLNVVLECRKGVNNLASLNAKDDTQNQLLWPSTFDDDNFTLNIMNAYVYANESLLQLLQS 419

Query: 480 NLDIYEHLRSLKDYFFLMDGEFSRSICHNLFSKLSKTLNPQELLNFATLHNILDKAL 310
           +  +Y HL SLK YFFL   +F  +   N   +L K   P + ++   L + LD AL
Sbjct: 420 SQSLYAHLYSLKHYFFLDQSDFFTTFLDNAQHELRK---PAKYISITKLQSQLDLAL 473



 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/24 (41%), Positives = 19/24 (79%)
 Frame = -1

Query: 211 QCLSLTYTVTWPLNIILSQEALLR 140
           + + L Y V +PL++ILS++A++R
Sbjct: 564 ETMQLCYKVPFPLSLILSRKAIIR 587


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = -2

Query: 477 LDIYEHLRSLKDYFFLMDGEFSRSICHNLFSKLSKTLNPQELLN 346
           L+ Y  L   K+ F  + GE    + H+ FSK SKTLN   LL+
Sbjct: 586 LETYLVLSKEKESFIFLAGETFDEVQHSDFSKDSKTLNVGSLLS 629


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 54  HGQFQILKIFSEHPGYPPHFDQKLEYFGVRSN 149
           + Q  ILK+F+       HFD KLE  G+ +N
Sbjct: 669 NAQLAILKLFAPQLSSSTHFDYKLEIKGIDNN 700


>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 996

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -2

Query: 369 LNPQELLNFATLHNILDKALGSS-ISHIHKFSENVSFTITNLL*VSNTAPPMYCNAC 202
           +N   L+N   L +ILD+++G   +  + + SE V  T T      + AP  Y   C
Sbjct: 327 VNSMILINLIELESILDESVGKDVVLTVQRGSELVELTCTAQS-THDIAPDRYVEVC 382


>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 803

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 85  PSTQDILLILTRNWNTLAYAAMPLGT 162
           PS   IL+ LTRNW T  +    L T
Sbjct: 520 PSLGKILISLTRNWQTTVFDDSDLAT 545


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1098

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = -2

Query: 510  YNSILTYFLVNLDIYEHLRSLKDYFFLMDGEFSR 409
            +  I  +  +N D Y+ + ++KDY+F+   +  R
Sbjct: 1062 FQDIAPFDFLNTDEYKSVMAIKDYYFVKSKDVKR 1095


>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
           Exg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
 Frame = +2

Query: 641 FEYGFFFTSSIIRAGWV*LELFISKSILLVKGSFEYFVN---SLH 766
           F YG      +   GW+ +E FI+ S   VK    Y V    SLH
Sbjct: 153 FPYGRLPIRGVNLGGWLSMEPFITPSFFQVKNETAYLVKDELSLH 197


>SPCC16A11.16c |||ARM1 family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 388

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 19/64 (29%), Positives = 32/64 (50%)
 Frame = -2

Query: 480 NLDIYEHLRSLKDYFFLMDGEFSRSICHNLFSKLSKTLNPQELLNFATLHNILDKALGSS 301
           N D ++HL SL +     + E  R IC NL  +  ++ +  EL   A    ++++ +   
Sbjct: 302 NRDFFKHLSSLMEAVAKPESESLREIC-NLSLEQVQSASGAELFLHALYDRLVNEGV-IV 359

Query: 300 ISHI 289
           ISHI
Sbjct: 360 ISHI 363


>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = -2

Query: 693 YTHPALIMEEVKKKPYSNIFLTRSDAKHNDASNI 592
           Y     + E V++KPY+ +     +  H+D +N+
Sbjct: 590 YEESGELTEAVRRKPYAVLLFDELEKAHHDITNL 623


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
 Frame = -2

Query: 489 FLVNLDIYEHLR--SLKDYFFLMDGEFSRSICHNLFSKLSKTLNPQELLNFATLHNILDK 316
           F   L +Y+ +R  SLK  +  M  +  R+   +   +LS      ELL  + L++IL  
Sbjct: 63  FYSKLRVYQTVRHWSLKQNWSSMSLDQKRNFILHCHHELSSG----ELLRNSALYSILYI 118

Query: 315 A------LGSSISHIHKFSENV 268
           A      +GS   H+H  SENV
Sbjct: 119 AAGAYDSVGSFEEHVHSISENV 140


>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -1

Query: 169 IILSQEALLRTPKYSSFWSK*GGYPG 92
           I+  + ++  T  Y ++W   GG+PG
Sbjct: 104 IVSERNSMCSTVNYPTWWDSCGGFPG 129


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,575,838
Number of Sequences: 5004
Number of extensions: 80740
Number of successful extensions: 236
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)