Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021116
(799 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0827 - 28457858-28458028,28458513-28458669,28458984-284590... 40 0.003
12_02_1042 + 25638585-25638711,25639585-25639745,25639873-256400... 33 0.26
02_04_0038 - 19110520-19110574,19110684-19110811,19110912-191110... 33 0.26
05_01_0396 - 3121189-3121226,3121552-3121609,3121938-3122060,312... 33 0.35
10_08_0042 - 14383143-14383628,14383647-14384609,14384697-143864... 31 1.1
05_01_0179 - 1240271-1241600,1241713-1241765 30 1.9
10_08_0611 - 19213994-19214053,19214776-19215732 29 3.2
07_01_0559 + 4151054-4151178,4151306-4153018,4153121-4153412,415... 29 3.2
01_01_0090 + 706340-707296,707370-707513,707596-707682,707771-70... 29 3.2
01_01_0088 + 688792-691441,691629-693013 29 3.2
11_01_0692 - 5700394-5700474,5700546-5702675,5705033-5706169,570... 29 4.3
06_03_1156 - 28069663-28070393,28070966-28071231,28072023-28072909 28 7.5
06_03_0615 - 22761375-22761760,22762218-22765026 28 7.5
03_05_0167 - 21448714-21448846,21449748-21449870,21450024-214503... 28 7.5
05_01_0493 + 4113869-4116728,4116859-4117370 28 9.9
03_05_0508 - 25024826-25026439 28 9.9
>04_04_0827 - 28457858-28458028,28458513-28458669,28458984-28459083,
28459204-28459231,28459321-28459396,28461276-28461355,
28461642-28461805,28461897-28462056,28462154-28462277,
28462901-28463941,28464141-28464259,28464512-28464823,
28465222-28465425,28466068-28466751,28467301-28467474
Length = 1197
Score = 39.5 bits (88), Expect = 0.003
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Frame = -1
Query: 268 FVYNNESPLSFQHSSP---DVLQCLSLTYTVTWPLNIILSQEAL 146
FVY NE P+ +S DVL + L Y V WP+NI++++EAL
Sbjct: 923 FVYMNEQPVVSLKASTCGLDVLDDILLGYKVDWPVNIVITEEAL 966
>12_02_1042 +
25638585-25638711,25639585-25639745,25639873-25640064,
25640221-25640315,25640645-25640807,25640905-25641015,
25641611-25642741,25642813-25642965,25643060-25643159,
25643333-25643427,25643508-25643681,25643751-25643807,
25643887-25643958,25644151-25644249,25644320-25644451,
25644549-25644722,25644830-25644957,25645065-25645119
Length = 1072
Score = 33.1 bits (72), Expect = 0.26
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = -1
Query: 220 DVLQCLSLTYTVTWPLNIILSQEALLRTPKYSSFWSK 110
+ L L+ TY V+WPL++I++ EAL + + +F K
Sbjct: 824 EALDVLNFTYKVSWPLDLIVNTEALKKYNQVMAFLLK 860
>02_04_0038 -
19110520-19110574,19110684-19110811,19110912-19111085,
19111189-19111320,19111391-19111489,19111680-19111751,
19111831-19111887,19111957-19112130,19112211-19112305,
19112478-19112577,19112672-19112824,19112896-19114026,
19114621-19114731,19114829-19114991,19115364-19115458,
19115613-19115804,19115929-19116069
Length = 1023
Score = 33.1 bits (72), Expect = 0.26
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = -1
Query: 220 DVLQCLSLTYTVTWPLNIILSQEALLRTPKYSSFWSK 110
+ L L+ TY V+WPL++I++ EAL + + +F K
Sbjct: 775 EALDVLNFTYKVSWPLDLIVNTEALKKYNQVMAFLLK 811
>05_01_0396 -
3121189-3121226,3121552-3121609,3121938-3122060,
3122170-3122323,3122590-3122678,3123185-3123410,
3123575-3123760,3123859-3123914,3124381-3124464,
3124547-3124627,3124773-3125045,3125143-3125263,
3126094-3126230,3126406-3126697,3127401-3127585
Length = 700
Score = 32.7 bits (71), Expect = 0.35
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -2
Query: 507 NSILTYFLVNLDIYEHLRSLKDYFFLMDGEF 415
N++ +V D+ HL++LKDYF L G+F
Sbjct: 359 NNLWQLVVVRADLNGHLKALKDYFLLAKGDF 389
>10_08_0042 -
14383143-14383628,14383647-14384609,14384697-14386443,
14387901-14388010,14388767-14389003
Length = 1180
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = -2
Query: 528 VPARSRYNSILTYFLVNLDIYEHLRSLKDYFFLMDGEFSRSICHNLFSKLSKTLNPQELL 349
+P + +IL F+ + E L +KDYF + RS CH+L + K ++ +
Sbjct: 752 IPDYATLCTILPSFVKIGLMKEALHIIKDYFLQPGSKTDRSSCHSLMEGILKKAGIEKSI 811
Query: 348 NFATL 334
FA +
Sbjct: 812 EFAEI 816
>05_01_0179 - 1240271-1241600,1241713-1241765
Length = 460
Score = 30.3 bits (65), Expect = 1.9
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +3
Query: 603 RHYVWHRSGSKICSNMVSFLLPP 671
+H +WH G +C N+VS+L+PP
Sbjct: 267 KHSMWH--GRVLCPNVVSYLVPP 287
>10_08_0611 - 19213994-19214053,19214776-19215732
Length = 338
Score = 29.5 bits (63), Expect = 3.2
Identities = 20/78 (25%), Positives = 41/78 (52%)
Frame = -3
Query: 338 RYTISWIRHSVRLYLIFINSRRMFRLQ*RISSKFPTQLPRCTAMLVLDVYGHVAAEHYPV 159
++T+ W++ + L ++ + + R+Q R ++ FP P+ L + G++A
Sbjct: 6 KFTMEWLQDPLSLAIVVTVAVLIMRMQRRRAAPFPPG-PK-----PLPIVGNMAMMDQLT 59
Query: 158 PRGIAAYAKVFQFLVKMR 105
RG+AA AK + L+ +R
Sbjct: 60 HRGLAALAKEYGGLMHLR 77
>07_01_0559 +
4151054-4151178,4151306-4153018,4153121-4153412,
4154327-4154636,4155041-4155261
Length = 886
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +2
Query: 161 QDNVQRPRDRIRQGQALQYIGGAVLE 238
+D ++ P DR+R+GQAL +GG ++
Sbjct: 696 EDALKCPSDRLRKGQALNNLGGVYVD 721
>01_01_0090 + 706340-707296,707370-707513,707596-707682,707771-708105,
708462-708702,708783-708857,708932-709017,709451-709523,
709637-709961,710092-711750,711938-713322
Length = 1788
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = -2
Query: 465 EHLRSLKDYFFLMDGEFSRSICHNLFSKLSKTLNPQELLN 346
++L L D FLM G+ + + H+L +LS+ ++ +E N
Sbjct: 990 QYLNELYDNGFLMKGDDNHYVMHDLLHELSQIVSSRECAN 1029
>01_01_0088 + 688792-691441,691629-693013
Length = 1344
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = -2
Query: 465 EHLRSLKDYFFLMDGEFSRSICHNLFSKLSKTLNPQELLN 346
++L L D FLM G+ + + H+L +LS+ ++ +E N
Sbjct: 546 QYLNELYDNGFLMKGDDNHYVMHDLLHELSQIVSSRECAN 585
>11_01_0692 -
5700394-5700474,5700546-5702675,5705033-5706169,
5709679-5709975
Length = 1214
Score = 29.1 bits (62), Expect = 4.3
Identities = 21/61 (34%), Positives = 30/61 (49%)
Frame = +1
Query: 406 APRKFTVHQKEVILQTPQMLVYVQIDQEVRQNRIITTSSWYVSGNITERCQARCQCCNVI 585
+P VHQ++V L T LV+ + + V + I+ S GNIT RC+ R N
Sbjct: 476 SPSIVQVHQEDVTLLTMHDLVH-DLARYVMVDEILDASK---QGNITGRCRCRFALLNDC 531
Query: 586 T 588
T
Sbjct: 532 T 532
>06_03_1156 - 28069663-28070393,28070966-28071231,28072023-28072909
Length = 627
Score = 28.3 bits (60), Expect = 7.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 93 PGYPPHFDQKLEYFGVRSNASWD 161
PGYPP +DQ ++FG + +D
Sbjct: 191 PGYPPFYDQH-QHFGAHGHGEYD 212
>06_03_0615 - 22761375-22761760,22762218-22765026
Length = 1064
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 251 ISSKFPTQLPRCTAMLVLDVYGHVAAEHYP 162
+S + P +L C+A++VLD+ G+ A P
Sbjct: 300 LSGRIPPELSNCSALVVLDLSGNRLAGEVP 329
>03_05_0167 -
21448714-21448846,21449748-21449870,21450024-21450302,
21450389-21450672,21450737-21450964,21452937-21453110,
21453198-21453732,21453779-21453840,21453908-21454231,
21454664-21455093,21457033-21457268,21457355-21457414,
21457495-21457628,21457884-21458010,21458239-21458337,
21458414-21458513,21458601-21458671,21459101-21459172,
21459656-21459787,21460512-21460670
Length = 1253
Score = 28.3 bits (60), Expect = 7.5
Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Frame = -2
Query: 588 CDNIATLTACLTTFRNVATNVPARSRYNSILTYFLVNLDIYEHLRSLKDYFFLMDGEFSR 409
CD + L + T+RN P + + L++F+ L+ Y YF + +
Sbjct: 314 CDTMQNLREAIATYRNSILRQPDEMKREASLSFFVEYLERY--------YFLICFAVYVH 365
Query: 408 SICHNLFSKLSKTLNPQELLNF-ATLHNILDKAL 310
S+C S S+ ++ + + L++IL + L
Sbjct: 366 SVCSAQQSNFSEEVSFSDWMRARPELYSILRRLL 399
>05_01_0493 + 4113869-4116728,4116859-4117370
Length = 1123
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -3
Query: 254 RISSKFPTQLPRCTAMLVLDVYGHVAAEHYP 162
R+S P ++ CT + +LDV G+ + H P
Sbjct: 569 RLSGPMPPEIGSCTRLQLLDVGGNSLSGHVP 599
>03_05_0508 - 25024826-25026439
Length = 537
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = -2
Query: 408 SICHNLFSKLSKTLNPQELLNFATLHNILDKALGSSISHIHKFSENVSFTIT 253
++ +LF + + + +E L ATL NIL ++G S ++ ++ +F T
Sbjct: 159 ALARDLFGRAGRAVAVRERLASATLRNILRMSVGDKWSGVYGSADGEAFRRT 210
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,598,505
Number of Sequences: 37544
Number of extensions: 492705
Number of successful extensions: 1289
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1288
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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