Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021116
         (799 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33200| Best HMM Match : Spc97_Spc98 (HMM E-Value=0.0037)            50   3e-06
SB_18135| Best HMM Match : Cytochrom_B561 (HMM E-Value=0.5)            33   0.20 
SB_14893| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.5  
SB_7922| Best HMM Match : SMC_C (HMM E-Value=1.5e-08)                  29   4.4  
SB_32698| Best HMM Match : RuvB_N (HMM E-Value=2.6)                    29   5.8  
SB_7838| Best HMM Match : Filamin (HMM E-Value=1.1e-22)                29   5.8  
SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)                        29   5.8  

>SB_33200| Best HMM Match : Spc97_Spc98 (HMM E-Value=0.0037)
          Length = 1235

 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
 Frame = -2

Query: 504  SILTYFLVNLDIYEHLRSLKDYFFLMDGEFSRSICHNLFSKLSKTLNPQELLNFATLHNI 325
            +++ YF+  L +  H    + + F+ DGEFS S+   L  KLS  ++P+EL +   ++ I
Sbjct: 949  AVVEYFIEELQVQRHFDVFRKFLFMEDGEFSLSLSDQLCEKLSSGVSPRELCSPTVMNAI 1008

Query: 324  LDKALGSSI-SHIHKFSENVSFTI 256
            +  AL  S+ +    F + ++F +
Sbjct: 1009 VSHALQLSVFADASGFEQELAFAL 1032


>SB_18135| Best HMM Match : Cytochrom_B561 (HMM E-Value=0.5)
          Length = 1595

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 25/122 (20%), Positives = 49/122 (40%)
 Frame = -2

Query: 570  LTACLTTFRNVATNVPARSRYNSILTYFLVNLDIYEHLRSLKDYFFLMDGEFSRSICHNL 391
            L  C  T+R +A  +P     +    +   +  IY  +        L+      + CH++
Sbjct: 739  LNCCHATYRTIAVTLPTAQLLSLYFPHNCCHA-IYRSIAVTLSTAQLLSRYLPLNCCHSI 797

Query: 390  FSKLSKTLNPQELLNFATLHNILDKALGSSISHIHKFSENVSFTITNLL*VSNTAPPMYC 211
            F  ++ TL+  +LL+    HN    A    ++  H     ++ T++    +S   P   C
Sbjct: 798  FRTIAVTLSAAQLLSRYLPHNYC--ATHLPLNCCHSIFRTIAVTLSTAQLLSRYLPHNCC 855

Query: 210  NA 205
            +A
Sbjct: 856  HA 857


>SB_14893| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 735

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +1

Query: 16  ERNSLRECSRESFTANFRFSKSSPST 93
           ER S R+CS  +FT++ R S SS +T
Sbjct: 287 ERRSQRQCSSSTFTSSLRSSTSSATT 312


>SB_7922| Best HMM Match : SMC_C (HMM E-Value=1.5e-08)
          Length = 493

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
 Frame = +1

Query: 385 TKQIVTYAPRKFTVHQKEVILQTPQMLVYVQIDQEVRQN-RIITTSSWYVSGNITERCQA 561
           T+ +++ +PR+ T    E +  T Q ++ V   Q+       +  +   +SG+  + C  
Sbjct: 207 TQCVISVSPRQDTTCCLECVAVT-QCVISVSPRQDATCGLECVAVTQCVISGSSRQGCDL 265

Query: 562 RCQCCNVIT*YVTGV 606
             + CNV+T  VT V
Sbjct: 266 WSEVCNVVTQCVTSV 280


>SB_32698| Best HMM Match : RuvB_N (HMM E-Value=2.6)
          Length = 157

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = -2

Query: 483 VNLDIYEHLRSLKDYFFLMDGEFSRSICHNLFSKLSK----TLNPQELLNF 343
           + L ++EH+    DY   M   FS+  CH L   LS     +LN ++LLNF
Sbjct: 43  MGLRVFEHING--DY--KMPYRFSQEACHLLLKHLSSDRIISLNKKDLLNF 89


>SB_7838| Best HMM Match : Filamin (HMM E-Value=1.1e-22)
          Length = 820

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 511 TTSSWYVSGNITERCQARCQCCNVIT 588
           T   W+V G I  R +A C+ C VIT
Sbjct: 235 TDGIWFVYGTIAIRHRAVCRACQVIT 260


>SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)
          Length = 2681

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +1

Query: 190  YTSRTSIAVHRGSCVGNLEEIRYCKRNILREFMNMRYRRTEC 315
            Y    S A     C G  EE  YCK+   R+  ++RY+   C
Sbjct: 1278 YCDNPSPAAGGSDCAGKSEEYTYCKK---RDCCDVRYKSVGC 1316


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,162,150
Number of Sequences: 59808
Number of extensions: 578687
Number of successful extensions: 1305
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1304
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)