Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021116
(799 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC042165-1|AAH42165.1| 488|Homo sapiens Similar to tubulin, gam... 56 2e-07
BC023573-1|AAH23573.1| 1009|Homo sapiens TUBGCP6 protein protein. 56 2e-07
AL022328-10|CAI42756.1| 1819|Homo sapiens tubulin, gamma complex... 56 2e-07
AF272887-1|AAK82968.1| 1819|Homo sapiens gamma-tubulin complex c... 56 2e-07
BC111957-1|AAI11958.1| 902|Homo sapiens tubulin, gamma complex ... 31 3.6
BC093770-1|AAH93770.1| 902|Homo sapiens tubulin, gamma complex ... 31 3.6
AL360181-1|CAH70275.1| 902|Homo sapiens tubulin, gamma complex ... 31 3.6
AK223586-1|BAD97306.1| 901|Homo sapiens tubulin, gamma complex ... 31 3.6
AF042379-1|AAC39728.1| 902|Homo sapiens spindle pole body prote... 31 3.6
AB040880-1|BAA95971.1| 1721|Homo sapiens KIAA1447 protein protein. 30 8.4
>BC042165-1|AAH42165.1| 488|Homo sapiens Similar to tubulin, gamma
complex associated protein 6 protein.
Length = 488
Score = 55.6 bits (128), Expect = 2e-07
Identities = 29/82 (35%), Positives = 44/82 (53%)
Frame = -2
Query: 492 YFLVNLDIYEHLRSLKDYFFLMDGEFSRSICHNLFSKLSKTLNPQELLNFATLHNILDKA 313
YF V L + H +L+ + + DGEF++S+ LF KL P ELLN L+++L KA
Sbjct: 192 YFFVELHLEAHYEALRHFLLMEDGEFAQSLSDLLFEKLGAGQTPGELLNPLVLNSVLSKA 251
Query: 312 LGSSISHIHKFSENVSFTITNL 247
L S+ + N+S + L
Sbjct: 252 LQCSLHGDTPHASNLSLALKYL 273
Score = 44.0 bits (99), Expect = 6e-04
Identities = 21/45 (46%), Positives = 28/45 (62%)
Frame = -1
Query: 247 PLSFQHSSPDVLQCLSLTYTVTWPLNIILSQEALLRTPKYSSFWS 113
P F ++PDVL CL L Y V WPLNI++++ L KYS +S
Sbjct: 274 PEVFAPNAPDVLSCLELRYKVDWPLNIVITEGCL---SKYSGVFS 315
>BC023573-1|AAH23573.1| 1009|Homo sapiens TUBGCP6 protein protein.
Length = 1009
Score = 55.6 bits (128), Expect = 2e-07
Identities = 29/82 (35%), Positives = 44/82 (53%)
Frame = -2
Query: 492 YFLVNLDIYEHLRSLKDYFFLMDGEFSRSICHNLFSKLSKTLNPQELLNFATLHNILDKA 313
YF V L + H +L+ + + DGEF++S+ LF KL P ELLN L+++L KA
Sbjct: 696 YFFVELHLEAHYEALRHFLLMEDGEFAQSLSDLLFEKLGAGQTPGELLNPLVLNSVLSKA 755
Query: 312 LGSSISHIHKFSENVSFTITNL 247
L S+ + N+S + L
Sbjct: 756 LQCSLHGDTPHASNLSLALKYL 777
Score = 44.0 bits (99), Expect = 6e-04
Identities = 21/45 (46%), Positives = 28/45 (62%)
Frame = -1
Query: 247 PLSFQHSSPDVLQCLSLTYTVTWPLNIILSQEALLRTPKYSSFWS 113
P F ++PDVL CL L Y V WPLNI++++ L KYS +S
Sbjct: 778 PEVFAPNAPDVLSCLELRYKVDWPLNIVITEGCL---SKYSGVFS 819
>AL022328-10|CAI42756.1| 1819|Homo sapiens tubulin, gamma complex
associated protein 6 protein.
Length = 1819
Score = 55.6 bits (128), Expect = 2e-07
Identities = 29/82 (35%), Positives = 44/82 (53%)
Frame = -2
Query: 492 YFLVNLDIYEHLRSLKDYFFLMDGEFSRSICHNLFSKLSKTLNPQELLNFATLHNILDKA 313
YF V L + H +L+ + + DGEF++S+ LF KL P ELLN L+++L KA
Sbjct: 1506 YFFVELHLEAHYEALRHFLLMEDGEFAQSLSDLLFEKLGAGQTPGELLNPLVLNSVLSKA 1565
Query: 312 LGSSISHIHKFSENVSFTITNL 247
L S+ + N+S + L
Sbjct: 1566 LQCSLHGDTPHASNLSLALKYL 1587
Score = 42.7 bits (96), Expect = 0.001
Identities = 20/45 (44%), Positives = 28/45 (62%)
Frame = -1
Query: 247 PLSFQHSSPDVLQCLSLTYTVTWPLNIILSQEALLRTPKYSSFWS 113
P F ++PDVL CL L Y V WPLNI++++ + KYS +S
Sbjct: 1588 PEVFAPNAPDVLSCLELRYKVDWPLNIVITEGCV---SKYSGVFS 1629
>AF272887-1|AAK82968.1| 1819|Homo sapiens gamma-tubulin complex
component protein.
Length = 1819
Score = 55.6 bits (128), Expect = 2e-07
Identities = 29/82 (35%), Positives = 44/82 (53%)
Frame = -2
Query: 492 YFLVNLDIYEHLRSLKDYFFLMDGEFSRSICHNLFSKLSKTLNPQELLNFATLHNILDKA 313
YF V L + H +L+ + + DGEF++S+ LF KL P ELLN L+++L KA
Sbjct: 1506 YFFVELHLEAHYEALRHFLLMEDGEFAQSLSDLLFEKLGAGQTPGELLNPLVLNSVLSKA 1565
Query: 312 LGSSISHIHKFSENVSFTITNL 247
L S+ + N+S + L
Sbjct: 1566 LQCSLHGDTPHASNLSLALKYL 1587
Score = 44.0 bits (99), Expect = 6e-04
Identities = 21/45 (46%), Positives = 28/45 (62%)
Frame = -1
Query: 247 PLSFQHSSPDVLQCLSLTYTVTWPLNIILSQEALLRTPKYSSFWS 113
P F ++PDVL CL L Y V WPLNI++++ L KYS +S
Sbjct: 1588 PEVFAPNAPDVLSCLELRYKVDWPLNIVITEGCL---SKYSGVFS 1629
>BC111957-1|AAI11958.1| 902|Homo sapiens tubulin, gamma complex
associated protein 2 protein.
Length = 902
Score = 31.5 bits (68), Expect = 3.6
Identities = 19/82 (23%), Positives = 38/82 (46%)
Frame = -2
Query: 501 ILTYFLVNLDIYEHLRSLKDYFFLMDGEFSRSICHNLFSKLSKTLNPQELLNFATLHNIL 322
+L + + ++ HLRS+K YF + G+F H + + P E + L +L
Sbjct: 499 LLDFLMEEKELVAHLRSIKRYFLMDQGDF---FVHFMDLAEEELRKPVEDITPPRLEALL 555
Query: 321 DKALGSSISHIHKFSENVSFTI 256
+ AL S ++ F +++ +
Sbjct: 556 ELALRMSTANTDPFKDDLKIDL 577
>BC093770-1|AAH93770.1| 902|Homo sapiens tubulin, gamma complex
associated protein 2 protein.
Length = 902
Score = 31.5 bits (68), Expect = 3.6
Identities = 19/82 (23%), Positives = 38/82 (46%)
Frame = -2
Query: 501 ILTYFLVNLDIYEHLRSLKDYFFLMDGEFSRSICHNLFSKLSKTLNPQELLNFATLHNIL 322
+L + + ++ HLRS+K YF + G+F H + + P E + L +L
Sbjct: 499 LLDFLMEEKELVAHLRSIKRYFLMDQGDF---FVHFMDLAEEELRKPVEDITPPRLEALL 555
Query: 321 DKALGSSISHIHKFSENVSFTI 256
+ AL S ++ F +++ +
Sbjct: 556 ELALRMSTANTDPFKDDLKIDL 577
>AL360181-1|CAH70275.1| 902|Homo sapiens tubulin, gamma complex
associated protein 2 protein.
Length = 902
Score = 31.5 bits (68), Expect = 3.6
Identities = 19/82 (23%), Positives = 38/82 (46%)
Frame = -2
Query: 501 ILTYFLVNLDIYEHLRSLKDYFFLMDGEFSRSICHNLFSKLSKTLNPQELLNFATLHNIL 322
+L + + ++ HLRS+K YF + G+F H + + P E + L +L
Sbjct: 499 LLDFLMEEKELVAHLRSIKRYFLMDQGDF---FVHFMDLAEEELRKPVEDITPPRLEALL 555
Query: 321 DKALGSSISHIHKFSENVSFTI 256
+ AL S ++ F +++ +
Sbjct: 556 ELALRMSTANTDPFKDDLKIDL 577
>AK223586-1|BAD97306.1| 901|Homo sapiens tubulin, gamma complex
associated protein 2 variant protein.
Length = 901
Score = 31.5 bits (68), Expect = 3.6
Identities = 19/82 (23%), Positives = 38/82 (46%)
Frame = -2
Query: 501 ILTYFLVNLDIYEHLRSLKDYFFLMDGEFSRSICHNLFSKLSKTLNPQELLNFATLHNIL 322
+L + + ++ HLRS+K YF + G+F H + + P E + L +L
Sbjct: 499 LLDFLMEEKELVAHLRSIKRYFLMDQGDF---FVHFMDLAEEELRKPVEDITPPRLEALL 555
Query: 321 DKALGSSISHIHKFSENVSFTI 256
+ AL S ++ F +++ +
Sbjct: 556 ELALRMSTANTDPFKDDLKIDL 577
>AF042379-1|AAC39728.1| 902|Homo sapiens spindle pole body protein
spc97 homolog GCP2 protein.
Length = 902
Score = 31.5 bits (68), Expect = 3.6
Identities = 19/82 (23%), Positives = 38/82 (46%)
Frame = -2
Query: 501 ILTYFLVNLDIYEHLRSLKDYFFLMDGEFSRSICHNLFSKLSKTLNPQELLNFATLHNIL 322
+L + + ++ HLRS+K YF + G+F H + + P E + L +L
Sbjct: 499 LLDFLMEEKELVAHLRSIKRYFLMDQGDF---FVHFMDLAEEELRKPVEDITPPRLEALL 555
Query: 321 DKALGSSISHIHKFSENVSFTI 256
+ AL S ++ F +++ +
Sbjct: 556 ELALRMSTANTDPFKDDLKIDL 577
>AB040880-1|BAA95971.1| 1721|Homo sapiens KIAA1447 protein protein.
Length = 1721
Score = 30.3 bits (65), Expect = 8.4
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -2
Query: 765 CKELTKYSKDPFTSKMDLEMKSSSYTHPALIMEEVK 658
CK L KD F+ K+ + S SY HPAL+ ++ K
Sbjct: 1510 CKALLMGDKD-FSPKLGRPLPSPSYVHPALVGKDKK 1544
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,956,920
Number of Sequences: 237096
Number of extensions: 2770561
Number of successful extensions: 9001
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9001
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9813323168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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