Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021116
(799 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z48241-7|CAA88287.1| 1026|Caenorhabditis elegans Hypothetical pr... 33 0.18
Z36237-3|CAA85272.1| 1026|Caenorhabditis elegans Hypothetical pr... 33 0.18
U50300-6|AAC48109.1| 642|Caenorhabditis elegans Hypothetical pr... 31 0.72
Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical pr... 29 5.1
U41104-4|AAK67239.1| 388|Caenorhabditis elegans Nuclear hormone... 29 5.1
U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna bindi... 29 5.1
AF083231-1|AAD03689.1| 388|Caenorhabditis elegans nuclear recep... 29 5.1
Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical pr... 28 6.7
U10438-5|AAA19086.1| 395|Caenorhabditis elegans Nuclear hormone... 28 6.7
AY204168-1|AAO39172.1| 395|Caenorhabditis elegans nuclear recep... 28 6.7
AL021171-5|CAE17871.1| 688|Caenorhabditis elegans Hypothetical ... 28 6.7
AC006605-4|AAK85441.2| 1378|Caenorhabditis elegans Hypothetical ... 28 6.7
D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin... 28 8.9
AC024835-2|AAK68537.1| 684|Caenorhabditis elegans Hypothetical ... 28 8.9
>Z48241-7|CAA88287.1| 1026|Caenorhabditis elegans Hypothetical
protein C48D5.2a protein.
Length = 1026
Score = 33.5 bits (73), Expect = 0.18
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -3
Query: 209 MLVLDVYGHVAAEHYPVPRGIAAYA-KVFQFLVKMRRISWV 90
M +DVY V A H P+ G+ A KVF +KM +WV
Sbjct: 220 MYGMDVYDGVDANHLPIEIGVGAVGIKVFHEGIKMNEYAWV 260
>Z36237-3|CAA85272.1| 1026|Caenorhabditis elegans Hypothetical
protein C48D5.2a protein.
Length = 1026
Score = 33.5 bits (73), Expect = 0.18
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -3
Query: 209 MLVLDVYGHVAAEHYPVPRGIAAYA-KVFQFLVKMRRISWV 90
M +DVY V A H P+ G+ A KVF +KM +WV
Sbjct: 220 MYGMDVYDGVDANHLPIEIGVGAVGIKVFHEGIKMNEYAWV 260
>U50300-6|AAC48109.1| 642|Caenorhabditis elegans Hypothetical
protein R03H4.1 protein.
Length = 642
Score = 31.5 bits (68), Expect = 0.72
Identities = 24/90 (26%), Positives = 39/90 (43%)
Frame = -2
Query: 531 NVPARSRYNSILTYFLVNLDIYEHLRSLKDYFFLMDGEFSRSICHNLFSKLSKTLNPQEL 352
N A S + I+ F +N Y ++ + Y F D S S+ ++F KL P L
Sbjct: 432 NSYALSFADLIIEQFKLNYSNYTYVSIDEGYGFFTDSPGS-SLALSVFRKLVAEHKPDIL 490
Query: 351 LNFATLHNILDKALGSSISHIHKFSENVSF 262
+ L + + +IH+ SEN+ F
Sbjct: 491 FITPRYSSSLQSRIRKNDDYIHQMSENIQF 520
>Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical
protein F26E4.8 protein.
Length = 449
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/65 (26%), Positives = 33/65 (50%)
Frame = -2
Query: 687 HPALIMEEVKKKPYSNIFLTRSDAKHNDASNISCDNIATLTACLTTFRNVATNVPARSRY 508
+PA + +PY++I T + +H+D + DN A C RN++ + P+ +
Sbjct: 170 YPAPQVSTAVVEPYNSILTTHTTLEHSDCA-FMVDNEAIYDICR---RNLSVDRPSYTNL 225
Query: 507 NSILT 493
N I++
Sbjct: 226 NRIIS 230
>U41104-4|AAK67239.1| 388|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 16 protein.
Length = 388
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/64 (18%), Positives = 31/64 (48%)
Frame = -2
Query: 561 CLTTFRNVATNVPARSRYNSILTYFLVNLDIYEHLRSLKDYFFLMDGEFSRSICHNLFSK 382
C F+N++ + +N+ YF++ H+R+ ++ + G++ ++ N F
Sbjct: 191 CFEDFKNLSIDQKKILFHNAYTPYFMMEGGFLSHIRNTPEHLVMPSGDYIDTLDLNSFYN 250
Query: 381 LSKT 370
S++
Sbjct: 251 CSES 254
>U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna binding
la related protein)homolog protein 1, isoform b protein.
Length = 1065
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/45 (26%), Positives = 26/45 (57%)
Frame = +1
Query: 16 ERNSLRECSRESFTANFRFSKSSPSTQDILLILTRNWNTLAYAAM 150
E++ RE +E + + + ++P T+ + + T++W TLA A +
Sbjct: 127 EKSKSRESKKEPWKTSTAPAATAPVTETVTVAATQDWPTLAKAEL 171
>AF083231-1|AAD03689.1| 388|Caenorhabditis elegans nuclear receptor
NHR-16 protein.
Length = 388
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/64 (18%), Positives = 31/64 (48%)
Frame = -2
Query: 561 CLTTFRNVATNVPARSRYNSILTYFLVNLDIYEHLRSLKDYFFLMDGEFSRSICHNLFSK 382
C F+N++ + +N+ YF++ H+R+ ++ + G++ ++ N F
Sbjct: 191 CFEDFKNLSIDQKKILFHNAYTPYFMMEGGFLSHIRNTPEHLVMPSGDYIDTLDLNSFYN 250
Query: 381 LSKT 370
S++
Sbjct: 251 CSES 254
>Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical
protein T28D6.2 protein.
Length = 444
Score = 28.3 bits (60), Expect = 6.7
Identities = 20/73 (27%), Positives = 35/73 (47%)
Frame = -2
Query: 711 EMKSSSYTHPALIMEEVKKKPYSNIFLTRSDAKHNDASNISCDNIATLTACLTTFRNVAT 532
+++ S Y P + V+ PY++I T + +H+D S DN A C RN+
Sbjct: 163 KLEFSIYPAPQISTSVVE--PYNSILTTHTTLEHSDCS-FMVDNEAIYDICR---RNLRV 216
Query: 531 NVPARSRYNSILT 493
+ P + N I++
Sbjct: 217 SRPTYNNLNRIIS 229
>U10438-5|AAA19086.1| 395|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 10 protein.
Length = 395
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -2
Query: 768 WCKELTKYSKDPFTSKMDLEMKSSSYTHPALI 673
W K L + PFT K+ L ++ S+ T+P+L+
Sbjct: 209 WAKTLPVFQSLPFTDKLAL-LRHSAITYPSLV 239
>AY204168-1|AAO39172.1| 395|Caenorhabditis elegans nuclear receptor
NHR-10 protein.
Length = 395
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -2
Query: 768 WCKELTKYSKDPFTSKMDLEMKSSSYTHPALI 673
W K L + PFT K+ L ++ S+ T+P+L+
Sbjct: 209 WAKTLPVFQSLPFTDKLAL-LRHSAITYPSLV 239
>AL021171-5|CAE17871.1| 688|Caenorhabditis elegans Hypothetical
protein H04D03.4 protein.
Length = 688
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/58 (24%), Positives = 29/58 (50%)
Frame = -2
Query: 618 AKHNDASNISCDNIATLTACLTTFRNVATNVPARSRYNSILTYFLVNLDIYEHLRSLK 445
+K NDA +SC ++ + CL+ + ++ + I T+ V+ Y+ ++ LK
Sbjct: 300 SKQNDARCLSCTSLDSALDCLSYYLDLHRGYHMKKSLKRIETFLSVSNRSYDLIKCLK 357
>AC006605-4|AAK85441.2| 1378|Caenorhabditis elegans Hypothetical
protein C07H6.3 protein.
Length = 1378
Score = 28.3 bits (60), Expect = 6.7
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Frame = +2
Query: 296 DIDEPSALSRILCNVAKFKSSWGFNV----FDNLLNRL*HMLRENSPSIRKK*SFKLLKC 463
D ++ L+ + N+ F + FD LL+ + +L S SIRKK + ++L+
Sbjct: 1157 DFEKADKLNEAMANLHGMMCEGSFTLWNQFFDELLDSIYQILSTFSQSIRKKLALRILQK 1216
Query: 464 SYMSRLTKKYVKIEL 508
++ TK + E+
Sbjct: 1217 MCTAQATKLFDSTEI 1231
>D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin
protein.
Length = 449
Score = 27.9 bits (59), Expect = 8.9
Identities = 19/73 (26%), Positives = 37/73 (50%)
Frame = -2
Query: 711 EMKSSSYTHPALIMEEVKKKPYSNIFLTRSDAKHNDASNISCDNIATLTACLTTFRNVAT 532
+++ S Y P + V+ PY++I T + +H+D + DN A C RN++
Sbjct: 164 KLEFSIYPAPQVCTAVVE--PYNSILTTHTTLEHSDCA-FMVDNEAIYDICR---RNLSV 217
Query: 531 NVPARSRYNSILT 493
+ P+ + N I++
Sbjct: 218 DRPSYTNLNRIIS 230
>AC024835-2|AAK68537.1| 684|Caenorhabditis elegans Hypothetical
protein Y57E12B.3 protein.
Length = 684
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -1
Query: 190 TVTWPLNIILSQEALLRTPKYSSFWSK*GGYPGCSEKILRI 68
T PLNI + EAL+ P+ + W GYP + K++ +
Sbjct: 260 TTMKPLNITIDPEALMDVPEIITHW----GYPVETHKVVTV 296
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,614,476
Number of Sequences: 27780
Number of extensions: 447207
Number of successful extensions: 1206
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1205
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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