Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021114
(695 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S... 62 1e-10
SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom... 60 3e-10
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 59 5e-10
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom... 51 2e-07
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S... 46 4e-06
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 46 5e-06
SPBC1604.20c |tea2|klp4|kinesin-like protein Tea2|Schizosaccharo... 40 3e-04
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 38 0.001
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo... 27 3.4
SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom... 27 3.4
SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subu... 27 3.4
SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 5.9
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc... 26 5.9
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 25 7.8
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo... 25 7.8
>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
Klp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 61.7 bits (143), Expect = 1e-10
Identities = 33/75 (44%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Frame = +1
Query: 253 QSLLALKECIRAL-GMKGNNHLPFRVSKLTQVLRDSFIGDKSRTCMIAMISPAMASCEHS 429
+SLLAL CI +L + H+P+R SKLT++L+ S +G RTCMI ISP+ + +
Sbjct: 318 RSLLALGNCINSLCEPRRRQHVPYRDSKLTRLLKFS-LGGNCRTCMIVCISPSSEHYDET 376
Query: 430 LNTLRYADRVKELGT 474
NTL+Y +R K + T
Sbjct: 377 HNTLKYGNRAKNIKT 391
Score = 44.0 bits (99), Expect = 2e-05
Identities = 30/76 (39%), Positives = 39/76 (51%), Gaps = 13/76 (17%)
Frame = +2
Query: 65 TSGQTSANSNSSRSHAVFQIVV-------------RSPGMHRVHGKFSLIDLAGNERGAD 205
T T AN+ SSRSHAV QI + S H+V FS IDLAG+ER +
Sbjct: 243 TMSPTEANAVSSRSHAVLQIYITQTPKSGEKQEESESQNSHKVRSVFSFIDLAGSERASA 302
Query: 206 TSSANRQTRMESAEIN 253
T + ++ +E A IN
Sbjct: 303 TKNRGKRL-VEGANIN 317
>SPBC2F12.13 |klp5|sot1|kinesin-like protein
Klp5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 883
Score = 60.1 bits (139), Expect = 3e-10
Identities = 34/75 (45%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Frame = +1
Query: 253 QSLLALKECIRAL-GMKGNNHLPFRVSKLTQVLRDSFIGDKSRTCMIAMISPAMASCEHS 429
+SLLAL CI AL H+P+R SKLT++L+ S +G RT MI +SP+ E +
Sbjct: 319 KSLLALGNCINALCDPHRRAHVPYRDSKLTRLLKFS-LGGNCRTVMIVCVSPSSVHYEET 377
Query: 430 LNTLRYADRVKELGT 474
NTL+YA+R K + T
Sbjct: 378 HNTLKYANRAKNIKT 392
Score = 42.7 bits (96), Expect = 5e-05
Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 7/70 (10%)
Frame = +2
Query: 65 TSGQTSANSNSSRSHAVFQIVV----RSPGMHRVH--GKFSLIDLAGNERGADTSSANRQ 226
T T AN+ SSRSHAV Q+ + R+ G++ H S+IDLAG+ER T++ R
Sbjct: 251 TMSPTEANAASSRSHAVLQVTLIQKPRTAGINEDHTLATLSIIDLAGSERA--TATKLRG 308
Query: 227 TRM-ESAEIN 253
+R+ E A IN
Sbjct: 309 SRLFEGANIN 318
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 59.3 bits (137), Expect = 5e-10
Identities = 32/72 (44%), Positives = 47/72 (65%)
Frame = +1
Query: 253 QSLLALKECIRALGMKGNNHLPFRVSKLTQVLRDSFIGDKSRTCMIAMISPAMASCEHSL 432
QSLL L I AL K + H+P+R SKLT++L+DS +G K++T MI +S + E ++
Sbjct: 352 QSLLTLGRVINALVEKAH-HIPYRESKLTRLLQDS-LGGKTKTSMIVTVSSTNTNLEETI 409
Query: 433 NTLRYADRVKEL 468
+TL YA R K +
Sbjct: 410 STLEYAARAKSI 421
Score = 23.0 bits (47), Expect(2) = 1.5
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 77 TSANSNSSRSHAVFQIVV 130
T N SSRSH++F I +
Sbjct: 276 TKCNDLSSRSHSIFTITL 293
Score = 23.0 bits (47), Expect(2) = 1.5
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 161 KFSLIDLAGNERGADTSSANRQTRMESAEIN 253
K ++DLAG+E + + N++ R E+ IN
Sbjct: 322 KLHMVDLAGSENIGRSGAENKRAR-ETGMIN 351
>SPAC1834.07 |klp3|krp1|kinesin-like protein
Klp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 50.8 bits (116), Expect = 2e-07
Identities = 34/110 (30%), Positives = 55/110 (50%)
Frame = +1
Query: 139 GHAPRAREVLAHRPGGQRARRRHLLRQPTDQNGKRGDQQSLLALKECIRALGMKGNNHLP 318
G R R L G + + + Q ++ K +SL L I +L +H+P
Sbjct: 219 GETRRGRLFLVDLAGSESVGKSGAVGQTLEEAKKIN--RSLSTLGMVINSLTDSKLSHVP 276
Query: 319 FRVSKLTQVLRDSFIGDKSRTCMIAMISPAMASCEHSLNTLRYADRVKEL 468
+R SKLT++L++S +G SRT +I SP + +L+TLR+ R K +
Sbjct: 277 YRDSKLTRILKES-LGGNSRTTLIINCSPDSYNATETLSTLRFGHRAKSI 325
Score = 36.3 bits (80), Expect = 0.004
Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Frame = +2
Query: 77 TSANSNSSRSHAVFQIVV----RSPGMHRVHGKFSLIDLAGNERGADTSSANRQTRMESA 244
TS N+ SSRSH++F + V G R G+ L+DLAG+E S A QT E+
Sbjct: 194 TSMNAQSSRSHSIFVLEVVQTDTESGETR-RGRLFLVDLAGSE-SVGKSGAVGQTLEEAK 251
Query: 245 EIN 253
+IN
Sbjct: 252 KIN 254
>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 46.4 bits (105), Expect = 4e-06
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 6/77 (7%)
Frame = +1
Query: 253 QSLLALKECIRALGMKGNN------HLPFRVSKLTQVLRDSFIGDKSRTCMIAMISPAMA 414
+SL L + I ALG N+ H+P+R SKLT +L+ S +G ++T M +SP +
Sbjct: 746 KSLSCLGDVIHALGNASNSTTKEKSHIPYRNSKLTYLLKYS-LGKGAKTLMFVNVSPLKS 804
Query: 415 SCEHSLNTLRYADRVKE 465
+LN+LR+A +V +
Sbjct: 805 QFMDTLNSLRFATKVND 821
Score = 35.9 bits (79), Expect = 0.006
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Frame = +2
Query: 77 TSANSNSSRSHAVFQIVV---RSPGMHRVHGKFSLIDLAGNERGADTSSANRQTRMESAE 247
T AN SSRSH VF + + S G +L+DLAG+ER + + + + R E+
Sbjct: 685 TKANERSSRSHTVFMLYIDGENSRTKQICKGTLNLVDLAGSERLSYSQAVGDRLR-ETQA 743
Query: 248 IN 253
IN
Sbjct: 744 IN 745
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 46.0 bits (104), Expect = 5e-06
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Frame = +1
Query: 253 QSLLALKECIRALGM-KGNNHLPFRVSKLTQVLRDSFIGDKSRTCMIAMISPAMASCEHS 429
+SL L + I ALG K ++P+R SKLT +L+ S +G S+T M ISP +
Sbjct: 736 KSLSCLGDVIHALGSGKEGTYIPYRNSKLTNLLQYS-LGGNSKTLMFVNISPLKQHVPET 794
Query: 430 LNTLRYADRVK--ELGT 474
L +LR+A +V ++GT
Sbjct: 795 LCSLRFATKVNNTQIGT 811
Score = 36.3 bits (80), Expect = 0.004
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Frame = +2
Query: 77 TSANSNSSRSHAVFQIVV---RSPGMHRVHGKFSLIDLAGNERGADTSSANRQTRMESAE 247
T+AN +SSRSH+VF + + S +LIDLAG+ER + + S + + E+
Sbjct: 675 TNANEHSSRSHSVFMLHLNGSNSTTGETCRSTLNLIDLAGSERLSSSQSVGERLK-ETQA 733
Query: 248 IN 253
IN
Sbjct: 734 IN 735
>SPBC1604.20c |tea2|klp4|kinesin-like protein
Tea2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 628
Score = 40.3 bits (90), Expect = 3e-04
Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Frame = +2
Query: 77 TSANSNSSRSHAVFQI--VVRSPGMHRVH-GKFSLIDLAGNERGADTSSANRQTRMESAE 247
T N+ SSRSHA+ Q+ + +P H SL+DLAG+ER +SA+ + R E A
Sbjct: 325 TDFNTYSSRSHAILQVFLIRNNPTAHTSQISSLSLVDLAGSER----ASAHHERRKEGAF 380
Query: 248 IN 253
IN
Sbjct: 381 IN 382
Score = 39.5 bits (88), Expect = 4e-04
Identities = 20/55 (36%), Positives = 34/55 (61%)
Frame = +1
Query: 304 NNHLPFRVSKLTQVLRDSFIGDKSRTCMIAMISPAMASCEHSLNTLRYADRVKEL 468
+ H+P+R SKLT++L+ S G +S+ ++A IS + NTL++A R + L
Sbjct: 407 SGHIPYRESKLTRLLQQSLSG-QSQISLLATISIESNHTMETTNTLKFASRAQNL 460
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 37.9 bits (84), Expect = 0.001
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Frame = +1
Query: 253 QSLLALKECIRALGMK--GNNHL-PFRVSKLTQVL-RDSFIGDKSRTCMIAMISPAMASC 420
+SLL L +C+ AL K G H+ PFR SKLT++L + + M+ I P S
Sbjct: 318 RSLLTLGQCLEALRRKHEGKQHIIPFRQSKLTELLFHSGHLSGLAGINMLVNIDP-FGSF 376
Query: 421 EHSLNTLRYADRVKEL 468
+ + +RY+ +E+
Sbjct: 377 DENAQVMRYSANAREI 392
>SPBC651.09c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 560
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/50 (22%), Positives = 25/50 (50%)
Frame = +3
Query: 519 MLPARDDLAHLRSLNDGDMSAEMYTFHEAIDELQRAEEEVLDNHKAVSDY 668
M +D+L L ++D D+++ H+ +D++ + + +N DY
Sbjct: 1 MADFQDELLALAGIDDSDVASNRKRAHDDLDDVLSSSSDEDNNENVGQDY 50
>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 585
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 103 LARRVPDRGAVPGHAPRAREVLAHRPGGQ 189
++R V D PG+ P A E+L + GG+
Sbjct: 325 ISREVSDGVIAPGYEPEALELLKKKKGGK 353
>SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subunit
Rpc82 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 591
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 528 ARDDLAHLRSLNDGDMSAEMYTFHEAIDELQRAEEEVLDNH 650
A ++L + LN+ D AE + E++DE + +VL H
Sbjct: 349 ASNELRVMEKLNELDELAEEDNYEESVDENANRKSKVLAQH 389
>SPBP8B7.28c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 215
Score = 25.8 bits (54), Expect = 5.9
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = -3
Query: 156 CTRCMPGDRTTIWNTACER 100
C C P +IW TAC++
Sbjct: 80 CRTCQPKQHDSIWCTACQQ 98
>SPBC685.09 |orc2|orp2|origin recognition complex subunit
Orc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -2
Query: 583 SADMSPSLRERRCARSSRAGSMSTSAAETRRAGTG 479
S SPSL + S AG ++ E R GTG
Sbjct: 158 STPASPSLESHEFSESREAGLSQSNGFEARSHGTG 192
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 25.4 bits (53), Expect = 7.8
Identities = 14/65 (21%), Positives = 32/65 (49%)
Frame = +2
Query: 65 TSGQTSANSNSSRSHAVFQIVVRSPGMHRVHGKFSLIDLAGNERGADTSSANRQTRMESA 244
TSG+ SA S+++ + + V+ ++H K SL ++ + ++ ++R T+
Sbjct: 325 TSGEVSAQSSTNSTSSEESTSVKDEDSSKIHDK-SLKRKHEDDESSTSTKSSRTTKTPFT 383
Query: 245 EINSP 259
+ P
Sbjct: 384 RVGDP 388
>SPBC336.14c |ppk26||serine/threonine protein kinase
Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 589
Score = 25.4 bits (53), Expect = 7.8
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = -1
Query: 545 RQVVPRGQHVHVGSGDSPRRDGSMVPSSFTLSAYRSVLRLCSQEAMAGEIMAI 387
R ++ G H +G + R DG +PSS L Y +L + A + A+
Sbjct: 41 RNILLYGSCKHSENGCAFRHDGPFIPSSENLEQYSVKKKLNAASASFQPVRAL 93
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,165,568
Number of Sequences: 5004
Number of extensions: 38886
Number of successful extensions: 162
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -