Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021113
(685 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0227 - 15398371-15398925 31 1.1
08_02_1034 + 23823194-23823307,23823399-23823620,23823984-238243... 30 2.0
10_08_0575 + 18885403-18885483,18885591-18885949,18886320-18886617 29 3.4
06_03_0652 + 23166595-23166749,23168015-23168225,23168307-23168840 29 3.4
06_01_0670 - 4896847-4897470 29 3.4
05_01_0485 + 4042267-4042410,4042519-4042581,4042688-4042743,404... 29 3.4
03_05_0147 - 21268081-21268596 29 4.5
08_02_1577 + 27985066-27985434,27985520-27985594,27986159-279863... 28 6.0
05_03_0493 + 14691853-14692383 28 6.0
01_05_0264 + 20168409-20168593,20168726-20169055,20170142-201706... 28 7.9
>07_03_0227 - 15398371-15398925
Length = 184
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +3
Query: 195 RSGRADDQTGGRDKRR*KIAGGWWRGELRGNRGIFPDNFVSLLNEYATTRS 347
R GR G R + + GWWR ++R RG N + +YA RS
Sbjct: 122 RKGREGWVHGRRGRLAAEGMDGWWRSDIRRKRGGVEGNKDFMPGDYACARS 172
>08_02_1034 +
23823194-23823307,23823399-23823620,23823984-23824309,
23824648-23824777,23825145-23825441,23825550-23825815,
23827835-23828333,23828902-23828993,23829571-23829735,
23829817-23830204,23830275-23830393,23830494-23830524,
23830675-23830880,23830970-23831014,23831120-23831201,
23832210-23832398,23834499-23834602,23834669-23834759,
23835097-23835225,23835425-23835556,23835779-23835949,
23836143-23836171,23836214-23836301,23836313-23836391,
23836666-23836844
Length = 1390
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 608 YAAVNDDELNLNEGDIVTVISKVSP 682
Y V DDE NEGD++ SKV+P
Sbjct: 39 YVIVVDDEDRENEGDLIMAASKVTP 63
>10_08_0575 + 18885403-18885483,18885591-18885949,18886320-18886617
Length = 245
Score = 29.1 bits (62), Expect = 3.4
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -1
Query: 604 KQHPTLLLNWLRWERWSEFE 545
K HPT+ + W+ WE F+
Sbjct: 74 KSHPTVAMQWINWEELQSFD 93
>06_03_0652 + 23166595-23166749,23168015-23168225,23168307-23168840
Length = 299
Score = 29.1 bits (62), Expect = 3.4
Identities = 23/56 (41%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = +1
Query: 226 DVISDVERLPG---AGGEASYVETAAFSRTTSFLF*TNMLLRDQRACKGGVGLCTA 384
+VI D E LPG AGG + V AA T L TNM + D R +G C A
Sbjct: 163 NVIYDAEPLPGLSWAGGRVALVGDAAHPTTPHGLRSTNMSILDARV----LGCCLA 214
>06_01_0670 - 4896847-4897470
Length = 207
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 487 AWVCFHLICCXARPTASGTLRTRSSAPTEAS*GAMS 594
AW C + A A+G R R++AP A+ G S
Sbjct: 29 AWTCLAAVLAAAAAAAAGIWRLRAAAPVVAAMGGAS 64
>05_01_0485 +
4042267-4042410,4042519-4042581,4042688-4042743,
4043181-4043274,4043359-4043419,4044166-4044247,
4044356-4044411,4044599-4044662,4044982-4045045
Length = 227
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/52 (23%), Positives = 26/52 (50%)
Frame = -1
Query: 676 YLRYNSNDVAFVEVQLIVVHGSISKQHPTLLLNWLRWERWSEFEGCRMRWVE 521
+L+Y+ ND+ V +++ + + HP + N+ + W ++ R W E
Sbjct: 118 HLKYSGNDLLGVTAKVVDMPHIYVEHHPDIRKNFWDQQNWPKYVLVRYTWEE 169
>03_05_0147 - 21268081-21268596
Length = 171
Score = 28.7 bits (61), Expect = 4.5
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -1
Query: 571 RWERWSEFEGCRMRWVEH 518
RWE+W + G RW+ H
Sbjct: 30 RWEKWRRWGGVGWRWIRH 47
>08_02_1577 +
27985066-27985434,27985520-27985594,27986159-27986320,
27986415-27986590,27986681-27986756,27987154-27987282,
27987363-27987482,27987734-27987815,27988016-27988110,
27988427-27988491,27988604-27988802,27989426-27989620,
27989866-27989960,27990059-27990194,27990265-27990482,
27990729-27990856,27991148-27991617
Length = 929
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +2
Query: 41 FLVIS*SELKCAICGSMK*K 100
F+VI+ LKC ICGS+K K
Sbjct: 124 FVVINTRSLKCCICGSLKAK 143
>05_03_0493 + 14691853-14692383
Length = 176
Score = 28.3 bits (60), Expect = 6.0
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -2
Query: 147 ICLHCRH*TLITTSR 103
+CLHC H TL++T+R
Sbjct: 9 LCLHCHHATLVSTAR 23
>01_05_0264 +
20168409-20168593,20168726-20169055,20170142-20170670,
20170825-20170958,20171080-20171252,20171274-20171840,
20172487-20172716,20172954-20172995,20173096-20173224
Length = 772
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -1
Query: 649 AFVEVQLIVVHGSISKQHPTLLLNW 575
++ V L + HGSI +Q P L++W
Sbjct: 200 SYTSVPLFIEHGSIPEQPPIRLIDW 224
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,996,346
Number of Sequences: 37544
Number of extensions: 374626
Number of successful extensions: 1083
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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