Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021113
         (685 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g55390.1 68418.m06901 hydroxyproline-rich glycoprotein family...    27   8.8  
At5g01550.1 68418.m00070 lectin protein kinase, putative similar...    27   8.8  
At4g35370.1 68417.m05025 transducin family protein / WD-40 repea...    27   8.8  
At2g41260.2 68415.m05096 glycine-rich protein / late embryogenes...    27   8.8  
At2g41260.1 68415.m05095 glycine-rich protein / late embryogenes...    27   8.8  

>At5g55390.1 68418.m06901 hydroxyproline-rich glycoprotein family
           protein
          Length = 1332

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 68  KCAICGSMK*KIRDVVISVQCRQWRQIYHKKCL 166
           KC++C + + K    +    CR+  + YH+KCL
Sbjct: 350 KCSVCENGEVKTDSNLQFAVCRRCPKSYHRKCL 382


>At5g01550.1 68418.m00070 lectin protein kinase, putative similar to
           receptor lectin kinase 3 [Arabidopsis thaliana]
           gi|4100060|gb|AAD00733; contains protein kinase domain,
           Pfam:PF00069; contains legume lectins alpha and beta
           domains, Pfam:PF00138 and Pfam:PF00139
          Length = 688

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +1

Query: 472 VDARVAWVCFHLICCXARPTASGTLRT 552
           V+AR+A V   L+CC  RPT+  ++RT
Sbjct: 601 VEARLALVV-GLLCCHQRPTSRPSMRT 626


>At4g35370.1 68417.m05025 transducin family protein / WD-40 repeat
           family protein contains 4 (3 significant) WD-40 repeats;
           similar to periodic tryptophan protein 1 homolog  
           (Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
           (PIR2:I39360) [Homo sapiens]
          Length = 414

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/58 (24%), Positives = 28/58 (48%)
 Frame = +1

Query: 184 YDASEADELTIRPGDVISDVERLPGAGGEASYVETAAFSRTTSFLF*TNMLLRDQRAC 357
           YD+ + D+LTIRP D +     +     E +Y+E   +  + +     +M++ +   C
Sbjct: 112 YDSEDHDDLTIRPTDSLIICAAIK---HEVNYLEVYVYEESENIYLRNDMIISELPLC 166


>At2g41260.2 68415.m05096 glycine-rich protein / late embryogenesis
           abundant protein (M17) identical to late-embryogenesis
           abundant M17 protein GI:3342551 from [Arabidopsis
           thaliana]
          Length = 280

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +3

Query: 222 GGRDKRR*KIAGGWWRGELR 281
           GGR   R    GGWWRG  R
Sbjct: 73  GGRGGCRWGCCGGWWRGRCR 92



 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +3

Query: 222 GGRDKRR*KIAGGWWRGELR 281
           GGR   R    GGWWRG  R
Sbjct: 128 GGRGGCRWGCCGGWWRGRCR 147



 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +3

Query: 222 GGRDKRR*KIAGGWWRGELR 281
           GGR   R    GGWWRG  R
Sbjct: 183 GGRGGCRWGCCGGWWRGRCR 202



 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +3

Query: 222 GGRDKRR*KIAGGWWRGELR 281
           GGR   R    GGWWRG  R
Sbjct: 238 GGRGGCRWGCCGGWWRGRCR 257


>At2g41260.1 68415.m05095 glycine-rich protein / late embryogenesis
           abundant protein (M17) identical to late-embryogenesis
           abundant M17 protein GI:3342551 from [Arabidopsis
           thaliana]
          Length = 225

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +3

Query: 222 GGRDKRR*KIAGGWWRGELR 281
           GGR   R    GGWWRG  R
Sbjct: 73  GGRGGCRWGCCGGWWRGRCR 92



 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +3

Query: 222 GGRDKRR*KIAGGWWRGELR 281
           GGR   R    GGWWRG  R
Sbjct: 128 GGRGGCRWGCCGGWWRGRCR 147



 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +3

Query: 222 GGRDKRR*KIAGGWWRGELR 281
           GGR   R    GGWWRG  R
Sbjct: 183 GGRGGCRWGCCGGWWRGRCR 202


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,749,563
Number of Sequences: 28952
Number of extensions: 271013
Number of successful extensions: 658
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)