Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021112
         (865 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   2.3  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    23   3.1  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    23   4.1  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    22   5.4  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   7.1  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   7.1  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   7.1  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   7.1  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -3

Query: 179 QPKAARRRLLQS*S-LTPYLKLKCLSLK 99
           +PK   + LL S + L+PYL+  CLS +
Sbjct: 250 RPKMTPQSLLPSQTGLSPYLRFGCLSTR 277


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 243 CCLGIKPSVPDEMFH*NRPVSLPLF 317
           CC G   S+P ++ +  +   LPLF
Sbjct: 13  CCWGKSLSIPQQILNEFKSTLLPLF 37


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +1

Query: 358 NYSKRLAFNYLEEIAQEFFQQYGHRLNTVTRPYTFIEFDTCM 483
           ++ + +++ +LE +A E       + NTVT  +T    DT +
Sbjct: 106 DFLREISWIFLETVANENTTNCPEQKNTVTVTFTVQSDDTTL 147


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 228 WYSSILHALCSSSCIVAAKGSP 163
           W +SI H+L  + C V    +P
Sbjct: 184 WQNSIRHSLSFNDCFVKVPRTP 205


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 5/16 (31%), Positives = 11/16 (68%)
 Frame = +3

Query: 171 LWLPLCKRMSRARAIY 218
           +W P C+R++R   ++
Sbjct: 481 IWTPKCERLARTEKLF 496


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 5/16 (31%), Positives = 11/16 (68%)
 Frame = +3

Query: 171 LWLPLCKRMSRARAIY 218
           +W P C+R++R   ++
Sbjct: 481 IWTPKCERLARTEKLF 496


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 5/16 (31%), Positives = 11/16 (68%)
 Frame = +3

Query: 171 LWLPLCKRMSRARAIY 218
           +W P C+R++R   ++
Sbjct: 481 IWTPKCERLARTEKLF 496


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 5/16 (31%), Positives = 11/16 (68%)
 Frame = +3

Query: 171 LWLPLCKRMSRARAIY 218
           +W P C+R++R   ++
Sbjct: 481 IWTPKCERLARTEKLF 496


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,165
Number of Sequences: 336
Number of extensions: 3332
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 23789590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)