Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021112
(865 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr 2|... 103 2e-23
SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr 1... 42 9e-05
SPCC1223.12c |meu10||GPI anchored cell surface protein |Schizosa... 30 0.37
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 28 1.5
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||... 27 3.4
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 27 4.5
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 26 6.0
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 26 6.0
SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|c... 26 7.9
>SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr
2|||Manual
Length = 209
Score = 103 bits (248), Expect = 2e-23
Identities = 45/84 (53%), Positives = 62/84 (73%), Gaps = 1/84 (1%)
Frame = +1
Query: 256 LSPQSPMRCSIETGPYLFHYLIENHICYLVLCERNYSKRLAFNYLEEIAQEFFQQYGHR- 432
LSP S R SIE+G Y FHYLI+N ICYL +CE++Y ++LAF+YLEE+A EF+ +G
Sbjct: 36 LSPTSEKRASIESGDYTFHYLIDNGICYLCICEQSYPRKLAFSYLEELAGEFWNSFGEEA 95
Query: 433 LNTVTRPYTFIEFDTCMQRTRKQY 504
L RPY F++FDT MQ++++ Y
Sbjct: 96 LQPGLRPYAFVQFDTFMQKSKRVY 119
Score = 43.2 bits (97), Expect = 5e-05
Identities = 22/71 (30%), Positives = 42/71 (59%)
Frame = +3
Query: 549 LAPQLGDVQRIMMQNIDDVLQRGAILSELDTKTQNLSMMSQKYRKDATYLNTKSMLVKVT 728
L +L DV R+M +NI+D+L RG L ++ + +L S KY+K A +N +++ +
Sbjct: 131 LNTELKDVTRVMTKNIEDLLYRGDSLEKMADLSSDLRYSSAKYKKAARRVNLEALWRQYG 190
Query: 729 AGAVIVLVIVL 761
++I L+ ++
Sbjct: 191 PVSIIALLFLI 201
>SPAC6G9.11 |syb1||synaptobrevin |Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 42.3 bits (95), Expect = 9e-05
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Frame = +3
Query: 558 QLGDVQRIMMQNIDDVLQRGAILSELDTKTQNLSMMSQKYRKDATYLNTK------SMLV 719
Q+ D IM +NI V +RG L L KT NL++ +Q +R+ A + K M +
Sbjct: 38 QIDDTVGIMRENISKVSERGERLDSLQDKTDNLAVSAQGFRRGANRVRKKMWWKDMRMRL 97
Query: 720 KVTAGAVIVLVIVL 761
+ G +I+LV+++
Sbjct: 98 CIIIGIIILLVVII 111
>SPCC1223.12c |meu10||GPI anchored cell surface protein
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 416
Score = 30.3 bits (65), Expect = 0.37
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +1
Query: 340 LVLCERNYSKRLAFNYLEEIAQEFFQQYGHRLNTVTRPYTFIEFDTCMQR 489
+V+ NY + + YLE + +F+ Y R +VT P D +QR
Sbjct: 165 MVIVNNNYLREVDMPYLESVESKFYVSYNAREISVTLPRLKTVGDMTIQR 214
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 28.3 bits (60), Expect = 1.5
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +1
Query: 307 FHYLIENHICYLVLCERNYSKRLAFNYLEEIAQEFFQQYGHRL 435
FHY+ E HIC++ YS AF+ + +A+E +G R+
Sbjct: 437 FHYIPEKHICFVTFI--TYSAANAFH--DYLAEEEVLLHGRRI 475
>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
1|||Manual
Length = 459
Score = 27.1 bits (57), Expect = 3.4
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -1
Query: 700 LRYVASFRYFCDIIDRFCVFVSSSDSIAPLCSTSSMFCIMMRCTSP 563
L ++ F FC +I F ++VSS + LC S + ++ SP
Sbjct: 50 LGFLVEFFIFC-LIPLFVIYVSSKVGVFTLCIASFLPSFVLHVISP 94
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 26.6 bits (56), Expect = 4.5
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Frame = +1
Query: 313 YLIENHI---CYLVLCERNYSK--RLAFNYLEEIAQEFFQQY 423
YL++N + C+ L K L++NYL EI +FFQ +
Sbjct: 812 YLVDNRLGNDCFTALEYFKCLKVLNLSYNYLTEIPSKFFQNF 853
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 26.2 bits (55), Expect = 6.0
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +1
Query: 322 ENHICYLVLCERNYSKRLAFNYLEEIAQEFF 414
E+H C L+L E + +K LA + L + ++++
Sbjct: 495 ESHKCVLILTEGDSAKSLAVSGLSVVGRDYY 525
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 26.2 bits (55), Expect = 6.0
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -1
Query: 859 TTIYICCCVNYRSRLFPRDKP*LSWNHLENPEESTITS 746
+T + CC VN ++ +DK LS + EN +E+ + S
Sbjct: 2402 STGFYCCVVNVNGKILVKDK--LSRIYNENSDENILCS 2437
>SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 334
Score = 25.8 bits (54), Expect = 7.9
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 319 IENHICYLVLCERNYSKRLAFNY 387
I+N L E NYSKRL FN+
Sbjct: 289 IDNSKFINYLIEENYSKRLEFNF 311
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,968,010
Number of Sequences: 5004
Number of extensions: 54264
Number of successful extensions: 214
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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