Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021112
(865 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0945 - 7439776-7440026,7440109-7440269,7440824-7441011 103 1e-22
03_06_0257 - 32697469-32697520,32698183-32698301,32698536-326985... 94 1e-19
08_02_0127 + 12840738-12840913,12841475-12841635,12842123-128422... 76 4e-14
03_01_0459 + 3533718-3533916,3535009-3535150,3535290-3535410,353... 45 7e-05
06_01_0688 - 5022703-5022805,5023615-5023694,5024305-5024381,502... 42 8e-04
03_06_0347 + 33293915-33294104,33295143-33295284,33295365-332954... 40 0.003
10_01_0303 - 3337454-3337544,3338358-3338521,3338624-3338805,333... 37 0.024
07_01_0680 + 5128023-5128212,5128629-5128667,5129496-5129637,512... 34 0.17
07_01_0987 + 8320205-8320472,8321549-8321690,8321773-8321893,832... 33 0.22
06_01_0521 - 3773749-3773931,3774295-3774485,3775115-3775334 33 0.22
02_05_1125 + 34282559-34282796,34283247-34283437,34283540-342836... 31 1.6
01_06_1457 + 37508187-37508421,37509012-37509109,37509791-375099... 30 2.1
>01_01_0945 - 7439776-7440026,7440109-7440269,7440824-7441011
Length = 199
Score = 103 bits (248), Expect = 1e-22
Identities = 42/76 (55%), Positives = 58/76 (76%)
Frame = +1
Query: 277 RCSIETGPYLFHYLIENHICYLVLCERNYSKRLAFNYLEEIAQEFFQQYGHRLNTVTRPY 456
R SIETGPYLFHY+IE +CYL +C+ +Y K+LAF YLE++ EF + G+++ T RPY
Sbjct: 52 RMSIETGPYLFHYIIEGRVCYLTMCDCSYPKKLAFQYLEDLKNEFERVNGNQIETAARPY 111
Query: 457 TFIEFDTCMQRTRKQY 504
FI+FDT +Q+T+K Y
Sbjct: 112 AFIKFDTFIQKTKKLY 127
Score = 37.1 bits (82), Expect = 0.018
Identities = 20/43 (46%), Positives = 28/43 (65%)
Frame = +2
Query: 128 MVLMTMIARVADGLPLAATMQEDEQSACNILEYQNQAKMLFRN 256
MV +TMIARV D LPL + +D + + Y+ QAK+LF+N
Sbjct: 1 MVKLTMIARVTDDLPLVEGL-DDGRDLKDADFYKQQAKLLFKN 42
>03_06_0257 -
32697469-32697520,32698183-32698301,32698536-32698556,
32698903-32698979,32699331-32699477,32699561-32699721,
32700320-32700522
Length = 259
Score = 93.9 bits (223), Expect = 1e-19
Identities = 41/81 (50%), Positives = 56/81 (69%), Gaps = 5/81 (6%)
Frame = +1
Query: 277 RCSIETGPYLFHY-----LIENHICYLVLCERNYSKRLAFNYLEEIAQEFFQQYGHRLNT 441
R SIETGPY F Y +IE +CYL +C+R+Y K+LAF YLE++ EF + G ++ T
Sbjct: 52 RMSIETGPYFFQYPYVLYIIEGRVCYLTMCDRSYPKKLAFQYLEDLKNEFERVNGSQIET 111
Query: 442 VTRPYTFIEFDTCMQRTRKQY 504
RPY FI+FDT +Q+T+K Y
Sbjct: 112 AARPYAFIKFDTFIQKTKKLY 132
Score = 41.1 bits (92), Expect = 0.001
Identities = 21/43 (48%), Positives = 30/43 (69%)
Frame = +2
Query: 128 MVLMTMIARVADGLPLAATMQEDEQSACNILEYQNQAKMLFRN 256
MV +TM+ARV DGLPLA + +D + + Y+ QAK+LF+N
Sbjct: 1 MVKLTMVARVTDGLPLAEGL-DDGRDQKDADFYKQQAKLLFKN 42
>08_02_0127 +
12840738-12840913,12841475-12841635,12842123-12842202,
12842435-12842550,12842570-12842705,12842738-12842872
Length = 267
Score = 75.8 bits (178), Expect = 4e-14
Identities = 33/70 (47%), Positives = 47/70 (67%)
Frame = +1
Query: 277 RCSIETGPYLFHYLIENHICYLVLCERNYSKRLAFNYLEEIAQEFFQQYGHRLNTVTRPY 456
R SIETGPY+ IE +CYL +C+ +Y K+LAF YLE++ EF + G+++ T RPY
Sbjct: 52 RMSIETGPYI----IEGRVCYLTMCDHSYPKKLAFQYLEDLKNEFERVNGNQIETAARPY 107
Query: 457 TFIEFDTCMQ 486
FI+F +Q
Sbjct: 108 AFIKFGPYLQ 117
Score = 39.9 bits (89), Expect = 0.003
Identities = 21/43 (48%), Positives = 29/43 (67%)
Frame = +2
Query: 128 MVLMTMIARVADGLPLAATMQEDEQSACNILEYQNQAKMLFRN 256
MV +TMIARV DGLPL + +D + + Y+ QAK+LF+N
Sbjct: 1 MVKLTMIARVTDGLPLVEGL-DDGRDLKDADFYKQQAKLLFKN 42
>03_01_0459 +
3533718-3533916,3535009-3535150,3535290-3535410,
3535513-3535575,3535677-3535823
Length = 223
Score = 45.2 bits (102), Expect = 7e-05
Identities = 26/73 (35%), Positives = 44/73 (60%), Gaps = 5/73 (6%)
Frame = +3
Query: 558 QLGDVQRIMMQNIDDVLQRGAILSELDTKTQNLSMMSQKYRKDATYLNTK----SMLVK- 722
Q+ +V+ +MMQNI+ VL RG + L KT++L +Q +RK T + K +M +K
Sbjct: 140 QVTEVKGVMMQNIEKVLDRGEKIELLVDKTEDLRSQAQDFRKAGTKIRRKMWWENMKMKL 199
Query: 723 VTAGAVIVLVIVL 761
+ G V+ L++V+
Sbjct: 200 IVFGIVVALILVI 212
>06_01_0688 -
5022703-5022805,5023615-5023694,5024305-5024381,
5024670-5024816,5025654-5025876
Length = 209
Score = 41.5 bits (93), Expect = 8e-04
Identities = 22/43 (51%), Positives = 30/43 (69%)
Frame = +2
Query: 128 MVLMTMIARVADGLPLAATMQEDEQSACNILEYQNQAKMLFRN 256
MV +TMIARV DGLPLA + +D + + Y+ QAK+LF+N
Sbjct: 1 MVKLTMIARVTDGLPLAEGL-DDGRDQKDADFYKQQAKLLFKN 42
>03_06_0347 +
33293915-33294104,33295143-33295284,33295365-33295485,
33295590-33295652,33296524-33296553,33297411-33297905
Length = 346
Score = 39.5 bits (88), Expect = 0.003
Identities = 18/45 (40%), Positives = 29/45 (64%)
Frame = +3
Query: 558 QLGDVQRIMMQNIDDVLQRGAILSELDTKTQNLSMMSQKYRKDAT 692
Q+ +V+ +MM+NI+ VL RG + L KT+NL +Q +R+ T
Sbjct: 137 QVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQAGT 181
Score = 29.9 bits (64), Expect = 2.7
Identities = 11/54 (20%), Positives = 28/54 (51%)
Frame = +1
Query: 262 PQSPMRCSIETGPYLFHYLIENHICYLVLCERNYSKRLAFNYLEEIAQEFFQQY 423
P S + + + F+YL+E+ Y V+ + +++ +L+ + +F ++Y
Sbjct: 40 PASNNKFTYNCDGHTFNYLVEDGFTYCVVAVESVGRQIPIAFLDRVKDDFTKRY 93
>10_01_0303 -
3337454-3337544,3338358-3338521,3338624-3338805,
3339088-3339322
Length = 223
Score = 36.7 bits (81), Expect = 0.024
Identities = 20/66 (30%), Positives = 33/66 (50%)
Frame = +3
Query: 564 GDVQRIMMQNIDDVLQRGAILSELDTKTQNLSMMSQKYRKDATYLNTKSMLVKVTAGAVI 743
G++ +M+ NI+ +L RG +S L KT + + +RK + L + AV+
Sbjct: 138 GEIHTVMVDNIEKILDRGERISLLVDKTSTMQDSAFHFRKQSRRLRRALWMKNAKLLAVL 197
Query: 744 VLVIVL 761
VIVL
Sbjct: 198 TAVIVL 203
Score = 33.1 bits (72), Expect = 0.29
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Frame = +1
Query: 253 ELSPQSPMRCSIETGPYLFHYL------IENHICYLVLCERNYSKRLAFNYLEEIAQEFF 414
+L P + R Y+FH L + + +L + + +R+ F YLE+I F
Sbjct: 35 KLPPDAESRLCFAQDRYIFHVLRSPPPAAADGLTFLCMANDTFGRRIPFLYLEDIQMRFI 94
Query: 415 QQYG 426
+ YG
Sbjct: 95 KNYG 98
>07_01_0680 +
5128023-5128212,5128629-5128667,5129496-5129637,
5129727-5129847,5129951-5130013,5130114-5130203,
5130572-5130619,5131114-5131260
Length = 279
Score = 33.9 bits (74), Expect = 0.17
Identities = 21/68 (30%), Positives = 38/68 (55%)
Frame = +3
Query: 558 QLGDVQRIMMQNIDDVLQRGAILSELDTKTQNLSMMSQKYRKDATYLNTKSMLVKVTAGA 737
Q+ +V+ +MM+NI+ VL RG + L KT+NL SQ ++ + +L+ V+
Sbjct: 150 QVSEVKGVMMENIEKVLDRGEKIELLVDKTENL--RSQNSGIFIQWIAMEKLLIHVSVDR 207
Query: 738 VIVLVIVL 761
+ V +V+
Sbjct: 208 MRVWSMVM 215
>07_01_0987 +
8320205-8320472,8321549-8321690,8321773-8321893,
8322190-8322264,8322784-8322846,8322934-8323086
Length = 273
Score = 33.5 bits (73), Expect = 0.22
Identities = 13/53 (24%), Positives = 28/53 (52%)
Frame = +1
Query: 268 SPMRCSIETGPYLFHYLIENHICYLVLCERNYSKRLAFNYLEEIAQEFFQQYG 426
+P R S + F++L+ Y V+ + + K ++ +LE + +F ++YG
Sbjct: 68 APARFSYACDGHTFNFLLHRGYAYCVVAKESVPKNVSVAFLERLKDDFMKRYG 120
>06_01_0521 - 3773749-3773931,3774295-3774485,3775115-3775334
Length = 197
Score = 33.5 bits (73), Expect = 0.22
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = +3
Query: 558 QLGDVQRIMMQNIDDVLQRGAILSELDTKTQNLSMMSQKYRKDA 689
++ V+ +M+ NID VL+RG L L KT N+ + ++++ A
Sbjct: 134 EISQVRTVMIDNIDKVLERGDRLDMLVDKTANMQGNTIRFKRQA 177
Score = 28.7 bits (61), Expect = 6.3
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 301 YLFHYLIENHICYLVLCERNYSKRLAFNYLEEIAQEFFQQYG 426
Y+FH + I L + + +R+ F +LE+I F + YG
Sbjct: 52 YVFHAKRTDGITALCMADEAAGRRIPFAFLEDIHGRFVKTYG 93
>02_05_1125 +
34282559-34282796,34283247-34283437,34283540-34283629,
34283630-34283793,34284139-34284352
Length = 298
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +3
Query: 570 VQRIMMQNIDDVLQRGAILSELDTKTQNLSMMSQKYRKDA 689
V+ +M+ NID VL+RG L L KT + + ++++ A
Sbjct: 174 VRNVMIDNIDKVLERGDRLELLVDKTATMQGNTMRFKRQA 213
>01_06_1457 +
37508187-37508421,37509012-37509109,37509791-37509904,
37510361-37510426,37510659-37510745,37510902-37511012
Length = 236
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +3
Query: 561 LGDVQRIMMQNIDDVLQRGAILSELDTKTQNLSMMSQK 674
L + + I+ + I+ VLQRG L L K+ +LS SQK
Sbjct: 164 LDETKIILHKTIESVLQRGERLDSLVEKSSDLSAASQK 201
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,437,624
Number of Sequences: 37544
Number of extensions: 332500
Number of successful extensions: 942
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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