Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021112
(865 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34372| Best HMM Match : No HMM Matches (HMM E-Value=.) 106 2e-23
SB_493| Best HMM Match : No HMM Matches (HMM E-Value=.) 94 2e-19
SB_33522| Best HMM Match : SCPU (HMM E-Value=6.8) 39 0.005
SB_648| Best HMM Match : SHQ1 (HMM E-Value=2) 30 2.8
SB_59514| Best HMM Match : LRR_1 (HMM E-Value=0.16) 29 4.9
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 29 6.5
SB_22289| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_33136| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
>SB_34372| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 106 bits (255), Expect = 2e-23
Identities = 43/84 (51%), Positives = 65/84 (77%)
Frame = +1
Query: 253 ELSPQSPMRCSIETGPYLFHYLIENHICYLVLCERNYSKRLAFNYLEEIAQEFFQQYGHR 432
+L+ SP R SIE+G +FHY++EN +C+L L ++ +SKR AF++LE+IA EF ++YGH+
Sbjct: 40 KLTNHSPARSSIESGNMMFHYILENSVCFLTLTDKPFSKRAAFSFLEDIASEFNREYGHQ 99
Query: 433 LNTVTRPYTFIEFDTCMQRTRKQY 504
++ TRPY FIEFDT MQ+ ++ Y
Sbjct: 100 VSRATRPYPFIEFDTYMQKAKRNY 123
Score = 52.4 bits (120), Expect = 5e-07
Identities = 23/39 (58%), Positives = 32/39 (82%)
Frame = +2
Query: 137 MTMIARVADGLPLAATMQEDEQSACNILEYQNQAKMLFR 253
MTMI R+ DGLPLAA+M D++++ + +YQ+QAKMLFR
Sbjct: 1 MTMIGRLPDGLPLAASMPSDQETSQVLTQYQSQAKMLFR 39
Score = 47.2 bits (107), Expect(2) = 2e-11
Identities = 21/45 (46%), Positives = 30/45 (66%)
Frame = +3
Query: 627 SELDTKTQNLSMMSQKYRKDATYLNTKSMLVKVTAGAVIVLVIVL 761
S LD K NL +S+KY+KDATYLN +S K A A++ +I++
Sbjct: 201 SLLDDKAGNLRFVSEKYKKDATYLNLRSAYAKYAALAIVCTIIII 245
Score = 39.9 bits (89), Expect(2) = 2e-11
Identities = 19/29 (65%), Positives = 23/29 (79%)
Frame = +3
Query: 543 SHLAPQLGDVQRIMMQNIDDVLQRGAILS 629
+ L +L DVQR+M+QNIDDVLQRG LS
Sbjct: 133 NRLNDELVDVQRVMVQNIDDVLQRGEQLS 161
>SB_493| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 113
Score = 93.9 bits (223), Expect = 2e-19
Identities = 38/73 (52%), Positives = 57/73 (78%)
Frame = +1
Query: 253 ELSPQSPMRCSIETGPYLFHYLIENHICYLVLCERNYSKRLAFNYLEEIAQEFFQQYGHR 432
+L+ SP R SIE+G +FHY++EN +C+L L ++ +SKR AF++LE+IA EF ++YGH+
Sbjct: 40 KLTNHSPARSSIESGNMMFHYILENSVCFLTLTDKPFSKRAAFSFLEDIASEFNREYGHQ 99
Query: 433 LNTVTRPYTFIEF 471
++ TRPY FIEF
Sbjct: 100 VSRATRPYPFIEF 112
Score = 52.4 bits (120), Expect = 5e-07
Identities = 23/39 (58%), Positives = 32/39 (82%)
Frame = +2
Query: 137 MTMIARVADGLPLAATMQEDEQSACNILEYQNQAKMLFR 253
MTMI R+ DGLPLAA+M D++++ + +YQ+QAKMLFR
Sbjct: 1 MTMIGRLPDGLPLAASMPSDQETSQVLTQYQSQAKMLFR 39
>SB_33522| Best HMM Match : SCPU (HMM E-Value=6.8)
Length = 295
Score = 39.1 bits (87), Expect = 0.005
Identities = 14/48 (29%), Positives = 29/48 (60%)
Frame = +1
Query: 253 ELSPQSPMRCSIETGPYLFHYLIENHICYLVLCERNYSKRLAFNYLEE 396
E P + +C+ +G Y FH ++E+ + YL + ++ + K+ + +LEE
Sbjct: 135 EKIPGNDTKCTYVSGSYQFHVIVEDGLVYLCMADKEFGKKDPYAFLEE 182
>SB_648| Best HMM Match : SHQ1 (HMM E-Value=2)
Length = 327
Score = 29.9 bits (64), Expect = 2.8
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 4/72 (5%)
Frame = +1
Query: 280 CSIETGPYL--FHYLIENHICYLVLCERNYSKRLAFNYLEEIA-QEFFQQYGHRLNTVTR 450
C T P + +H+ ++ I + L E + S+ F+Y+E++A + YG +++++
Sbjct: 80 CDGNTHPNMNPYHFRLKYDIYQMFLPEGDLSEDSLFSYMEKMAYPNVIKTYGTKVSSLQA 139
Query: 451 P-YTFIEFDTCM 483
P + FDT +
Sbjct: 140 PSLPLVSFDTLL 151
>SB_59514| Best HMM Match : LRR_1 (HMM E-Value=0.16)
Length = 320
Score = 29.1 bits (62), Expect = 4.9
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +3
Query: 594 IDDVLQRGAILSELDTKTQNLSMMSQKYRKDATYLNTKSMLVKVTA 731
+DD LQR +E D +T L+ + R T+L +K ++++ A
Sbjct: 273 LDDYLQRNGFSNETDEQTSWLTNRRLELRHHVTFLGSKLFVLRLFA 318
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 28.7 bits (61), Expect = 6.5
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = -3
Query: 182 WQPKAARRRLLQS*SLTPYLKLKCLSLKHKIYVIEFNFNLRFFPSHSFENM 30
W K + L +S LT L+ K + KH++ V+ + + + + SFE +
Sbjct: 58 WDEKDTKNELAESSLLTKLLRDKLVVTKHEVEVLRSDPSSPLYSAKSFEEL 108
>SB_22289| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1102
Score = 28.3 bits (60), Expect = 8.5
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Frame = +1
Query: 268 SPMRCSIETGPYLFHY----LIENHICYLVLCERNYSKRLAFNYLEEIAQEFFQQYG--H 429
SP++C+++TG + + + N C V + + ++++F Y + I+ + G +
Sbjct: 209 SPIKCNVDTGKWRTTFAPLTIRHNAFCQDVTLPKGFQQKISFFY-QNISCKSLNLDGLTN 267
Query: 430 RLNTVTRPYT-FIEFDTCMQRTRKQ 501
+L T+ T EF TC T K+
Sbjct: 268 KLETLIITKTELAEFGTCFNVTLKE 292
>SB_33136| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 181
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +3
Query: 693 YLNTKSMLVKVTAGAVIVLVIVLSSGFSR*FHDSYGLSRGNKR 821
+L + LVK+ G + +V+V++ GF+ FHD + + KR
Sbjct: 10 HLRLRRHLVKILIGVAVCVVVVIALGFA--FHDVPDVRQLRKR 50
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,064,143
Number of Sequences: 59808
Number of extensions: 404449
Number of successful extensions: 1188
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1185
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2467263854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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