Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021112
         (865 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U67949-6|AAB07559.2|  214|Caenorhabditis elegans Hypothetical pr...    93   2e-19
AC006714-18|AAK29722.2|   90|Caenorhabditis elegans F-box a prot...    29   5.7  
AC006714-14|AAK29720.2|  264|Caenorhabditis elegans F-box a prot...    29   5.7  
U39742-5|AAK39199.1|  767|Caenorhabditis elegans Hypothetical pr...    28   9.9  

>U67949-6|AAB07559.2|  214|Caenorhabditis elegans Hypothetical
           protein F55A4.1 protein.
          Length = 214

 Score = 93.5 bits (222), Expect = 2e-19
 Identities = 36/79 (45%), Positives = 58/79 (73%)
 Frame = +1

Query: 268 SPMRCSIETGPYLFHYLIENHICYLVLCERNYSKRLAFNYLEEIAQEFFQQYGHRLNTVT 447
           +P + S+E+GP++FHY+I  +IC LVLC+RN+ +++AF YL +I QEF  +   R+  V 
Sbjct: 48  APAQQSVESGPFVFHYIIVQNICALVLCDRNFPRKVAFQYLSDIGQEFLNENSSRIEQVV 107

Query: 448 RPYTFIEFDTCMQRTRKQY 504
           RPY F+EFD  +Q+ +++Y
Sbjct: 108 RPYHFLEFDKYIQQAKQRY 126



 Score = 61.3 bits (142), Expect = 9e-10
 Identities = 33/72 (45%), Positives = 44/72 (61%)
 Frame = +3

Query: 558 QLGDVQRIMMQNIDDVLQRGAILSELDTKTQNLSMMSQKYRKDATYLNTKSMLVKVTAGA 737
           +L DV RIM+ NI+DV+ RG  L+ L+ +   LS MS+KYR DA  LN +S + KV A  
Sbjct: 140 ELQDVTRIMVTNIEDVIHRGEALNILENRASELSGMSKKYRDDAKALNRRSTIFKVAASI 199

Query: 738 VIVLVIVLSSGF 773
            I  V+ L   F
Sbjct: 200 GIAGVLFLMLRF 211



 Score = 38.7 bits (86), Expect = 0.005
 Identities = 19/41 (46%), Positives = 29/41 (70%), Gaps = 2/41 (4%)
 Frame = +2

Query: 137 MTMIARVADGLPLAATMQ--EDEQSACNILEYQNQAKMLFR 253
           +T+IARV DGL LA +++   D     ++++Y NQAKMLF+
Sbjct: 3   LTLIARVRDGLILATSIEGNNDGSGDSSMVKYSNQAKMLFK 43


>AC006714-18|AAK29722.2|   90|Caenorhabditis elegans F-box a protein
           protein 208 protein.
          Length = 90

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = +2

Query: 104 VRDILTLNMVLMTMIARVAD---GLPLAATMQEDEQSACNILEYQNQAKMLFRN*ALSPR 274
           +RDIL  N      + R+A+   G+P  A + + + +  N++ Y+N   + F + +L  R
Sbjct: 28  IRDILLNNATFQNCVIRIAEWKTGIPEIAKVFQPDYTDGNLIRYRNSFTISFTSHSLCIR 87


>AC006714-14|AAK29720.2|  264|Caenorhabditis elegans F-box a protein
           protein 77 protein.
          Length = 264

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
 Frame = +2

Query: 104 VRDILTLNMVLMTMIARVAD---GLPLAATMQEDEQSACNILEYQNQAKMLFRN*ALSPR 274
           +RDIL  N      + R+A+   G+P  A + + + +  N++ Y+N   + F + +L  R
Sbjct: 202 IRDILLNNATFQNCVIRIAEWKTGIPEIAKVFQPDYTDGNLIRYRNSFTISFTSHSLCIR 261


>U39742-5|AAK39199.1|  767|Caenorhabditis elegans Hypothetical
           protein C25F6.4 protein.
          Length = 767

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 360 VSFTQDQITYVIFNQIMEEIRAGFNGTSHR 271
           V F+QD  T+ +F+QI    R   N TS R
Sbjct: 287 VIFSQDGKTFPLFSQISSSERQSLNNTSRR 316


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,484,498
Number of Sequences: 27780
Number of extensions: 311651
Number of successful extensions: 937
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)