Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021111
(830 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr 3|... 99 9e-22
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 30 0.35
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 29 1.1
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 29 1.1
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc... 27 3.3
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 27 3.3
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 27 3.3
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi... 27 4.3
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 26 5.7
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom... 26 7.5
SPBC3B8.02 |php5||CCAAT-binding factor complex subunit Php5|Schi... 26 7.5
SPCC191.07 |cyc1||cytochrome c |Schizosaccharomyces pombe|chr 3|... 26 7.5
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 25 10.0
>SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 340
Score = 98.7 bits (235), Expect = 9e-22
Identities = 46/96 (47%), Positives = 64/96 (66%)
Frame = +1
Query: 508 MCANLGAAQHFTPDHLQKEECKKSIEAAKFFYASGFFVAVSPESILLLAQHAHDNGHTFV 687
+C NLGAA ++ LQ+ K +E AK Y GF + VSPES+L LAQHA++N ++
Sbjct: 127 LCTNLGAANNYKLKDLQQPNVWKFVEEAKVIYVGGFHLTVSPESMLCLAQHANENNKPYI 186
Query: 688 MNLSAPFVSQFYKEPLEKLLPYVDVSSGMNRRQTLS 795
MNLSAPF+SQF+KE ++ ++PY D G N + LS
Sbjct: 187 MNLSAPFLSQFFKEQMDSVIPYCDYVIG-NEAEILS 221
Score = 59.7 bits (138), Expect = 5e-10
Identities = 27/73 (36%), Positives = 44/73 (60%)
Frame = +2
Query: 290 YIAGGSVQNSLRVAQWILKKPNICTYFGCLGNDEYAKLLKERAIADGVHVQYQVSNEVAT 469
Y AGG+ QNS R AQ++L PN + GC+G D++A +L E G+ ++ V T
Sbjct: 53 YSAGGAAQNSCRAAQYVLP-PNSTVFAGCVGQDKFADMLLESNEKAGLRSEFSVDPTTPT 111
Query: 470 GTCAVLVTGTHRS 508
G CAV+++ +++
Sbjct: 112 GVCAVVLSNNNKN 124
Score = 35.5 bits (78), Expect = 0.009
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +3
Query: 135 LLVGIGNPLLDISASVDEDLLKKYDLHPDDAIMAEEKHM 251
+L G+ NPLLD + L+KY L +DA++A E M
Sbjct: 5 ILFGLENPLLDYYVGGETATLEKYGLKSNDAVLASESQM 43
Score = 27.9 bits (59), Expect = 1.9
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 747 PICRRVFGNESEADAFAKAFNINSSDVQ 830
P C V GNE+E ++ + I S+DVQ
Sbjct: 207 PYCDYVIGNEAEILSYGENHGIKSTDVQ 234
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 30.3 bits (65), Expect = 0.35
Identities = 20/57 (35%), Positives = 31/57 (54%)
Frame = +1
Query: 640 ILLLAQHAHDNGHTFVMNLSAPFVSQFYKEPLEKLLPYVDVSSGMNRRQTLSRRHST 810
+LLL D HT+ +N+ A + +FY P LL Y + + ++ R +LSRR T
Sbjct: 136 VLLLCDGCDDAYHTYCLNMDAVPIEEFYC-PNCVLLNYQE-NETLSSRISLSRRGQT 190
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +2
Query: 311 QNSLRVAQWILKKPNICTYFGCLGNDEYAKLLKERAIADGVHV 439
+N+L +I+KK + Y GC G + Y+ R + G +
Sbjct: 187 RNALTPLDFIMKKNELMKYIGCFGVEAYSTASGTRTLQAGERI 229
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 28.7 bits (61), Expect = 1.1
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Frame = -2
Query: 286 CIILVNEFRVDGMCFSSAIMASS-GCR---SYFFSKSSSTLADMSNKGFPMPTNNPSWSH 119
C I + G S++I S G R SYF + SSST + S+ P+++ S S
Sbjct: 114 CTISTSSLSYSGTISSTSIAPSMIGTRTSSSYFITSSSSTPSSSSSSSSSSPSSSSSKSS 173
Query: 118 MESETS 101
S++S
Sbjct: 174 SSSKSS 179
>SPAC11E3.06 |map1||MADS-box transcription factor
Map1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 27.1 bits (57), Expect = 3.3
Identities = 14/55 (25%), Positives = 25/55 (45%)
Frame = -2
Query: 772 FPKTRRHMGEVSRAVPYRTVRQRAHSSS*QTYVHYRAHAGPITISTLEKLPQRNQ 608
FPK + + S + Y T Q + +S TY H R+ + + P++N+
Sbjct: 244 FPKQGKRIFSPSTGIDYETTGQHSVNSPPSTYKHRRSLNKSFATRSEPQTPRKNK 298
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 27.1 bits (57), Expect = 3.3
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -2
Query: 679 YVHYRAHAGPITISTLEKLPQRNQKHKRTS 590
+ YR H G + S K P N HKR S
Sbjct: 1016 FTKYRNHFGNLMTSEETKAPDNNDLHKRLS 1045
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 27.1 bits (57), Expect = 3.3
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = -1
Query: 293 YTLHYTCQRVPSRWHV 246
YTL Y C+++P W++
Sbjct: 841 YTLSYVCEQIPDHWNL 856
>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
Gut2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 649
Score = 26.6 bits (56), Expect = 4.3
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 283 CRVYCWWKRSEFIKSSTMDSKET 351
C++Y W S+ +++ST+ SKET
Sbjct: 175 CKIYDWVAGSKNLRASTIFSKET 197
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 26.2 bits (55), Expect = 5.7
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 293 IAGGSVQNSLRVAQWILKKPNICTYF-GCLGN 385
+ GG+V S R+ ILK +IC GC+ N
Sbjct: 1067 VVGGNVLTSQRITDVILKAFSICAASQGCMNN 1098
>SPAC31G5.15 |||phosphatidylserine decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 980
Score = 25.8 bits (54), Expect = 7.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 123 HIWNQKRPLCNTSYVVVNRTKTKMFSRVY 37
H W + L TSYV +N+ + + FS+ +
Sbjct: 620 HDWKRVDRLMMTSYVSLNQAQRRWFSKAF 648
>SPBC3B8.02 |php5||CCAAT-binding factor complex subunit
Php5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 415
Score = 25.8 bits (54), Expect = 7.5
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -2
Query: 181 TLADMSNKGFPMPTNNP-SWSHMESETSIM*Y 89
T A + N+GFPMPT + +S+ +S M Y
Sbjct: 221 TQAGLPNQGFPMPTGSQLPFSNQQSSQPSMQY 252
>SPCC191.07 |cyc1||cytochrome c |Schizosaccharomyces pombe|chr
3|||Manual
Length = 109
Score = 25.8 bits (54), Expect = 7.5
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 687 YELECALCLTVL*GTARETSPICRRVFGNES-EADAFA 797
++ CA C TV G A + P VFG ++ +A+ F+
Sbjct: 15 FKTRCAQCHTVEKGGANKVGPNLHGVFGRKTGQAEGFS 52
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 25.4 bits (53), Expect = 10.0
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +3
Query: 159 LLDISASVDEDLLKKYDLHPDDAIMAEEKHMPSTRNSLTSIMQSILLVEAFRIH 320
++D VDE+LL+ + DD E H+ NSL+ + S+ E +++
Sbjct: 465 VVDSELEVDENLLEDATMIQDDESHEGESHL---ENSLSEYVDSVPAEEIVKVN 515
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,611,289
Number of Sequences: 5004
Number of extensions: 78149
Number of successful extensions: 250
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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