Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021111
(830 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0012 - 24959542-24959684,24960132-24960192,24960995-249611... 94 1e-19
04_04_0520 - 25871932-25872074,25872234-25872294,25873267-258733... 82 5e-16
10_08_0259 + 16274430-16274747,16275180-16275242,16275329-162754... 29 3.4
04_03_0852 + 20289439-20289721,20289858-20290642 29 3.4
05_04_0395 - 20921606-20921869,20921971-20922112,20922206-209223... 29 6.0
01_06_1519 + 37942389-37943702,37944142-37944266,37944358-379444... 29 6.0
09_02_0435 - 9384225-9384412,9385084-9385133,9385209-9385274,938... 28 7.9
>02_05_0012 -
24959542-24959684,24960132-24960192,24960995-24961117,
24961196-24961262,24961510-24961580,24961650-24961747,
24962279-24962355,24963568-24963635,24963754-24963855,
24963945-24963976,24964066-24964112,24964263-24964316,
24964952-24965034
Length = 341
Score = 94.3 bits (224), Expect = 1e-19
Identities = 46/123 (37%), Positives = 70/123 (56%)
Frame = +2
Query: 254 IYSELVDKYNAEYIAGGSVQNSLRVAQWILKKPNICTYFGCLGNDEYAKLLKERAIADGV 433
+Y EL K N EYIAGG+ QNS+RVAQW+L+ P +Y GC+G D++ + +K+ A A GV
Sbjct: 46 MYDELASKGNVEYIAGGATQNSIRVAQWMLQTPGATSYMGCIGKDKFGEEMKKNAQAAGV 105
Query: 434 HVQYQVSNEVATGTCAVLVTGTHRSCAPISVLHNTSHQIIYRKKNARKALKQRSSFMLLV 613
Y TGTCAV V G RS ++ ++ + KK AL +++ ++ +
Sbjct: 106 TAHYYEDEAAPTGTCAVCVVGGERSLV-ANLSAANCYKSEHLKKPENWALVEKAKYIYIA 164
Query: 614 SLW 622
+
Sbjct: 165 GFF 167
Score = 93.1 bits (221), Expect = 2e-19
Identities = 42/88 (47%), Positives = 61/88 (69%)
Frame = +1
Query: 508 MCANLGAAQHFTPDHLQKEECKKSIEAAKFFYASGFFVAVSPESILLLAQHAHDNGHTFV 687
+ ANL AA + +HL+K E +E AK+ Y +GFF+ VSP+SI L+A+HA N F+
Sbjct: 131 LVANLSAANCYKSEHLKKPENWALVEKAKYIYIAGFFLTVSPDSIQLVAEHAAANNKVFL 190
Query: 688 MNLSAPFVSQFYKEPLEKLLPYVDVSSG 771
MNLSAPF+ +F+++ EK+LP+VD G
Sbjct: 191 MNLSAPFICEFFRDAQEKVLPFVDYIFG 218
Score = 61.7 bits (143), Expect = 7e-10
Identities = 27/42 (64%), Positives = 36/42 (85%)
Frame = +3
Query: 129 EGLLVGIGNPLLDISASVDEDLLKKYDLHPDDAIMAEEKHMP 254
EG+L+G+GNPLLDISA VD+ L KYD+ ++AI+AEEKH+P
Sbjct: 4 EGVLLGMGNPLLDISAVVDDAFLTKYDVKLNNAILAEEKHLP 45
>04_04_0520 -
25871932-25872074,25872234-25872294,25873267-25873389,
25873465-25873531,25873710-25873780,25873853-25874004,
25874082-25874158,25874323-25874435,25874503-25874598,
25874703-25874734,25874838-25874884,25875015-25875068,
25875212-25875289,25875607-25875698
Length = 401
Score = 82.2 bits (194), Expect = 5e-16
Identities = 41/98 (41%), Positives = 56/98 (57%), Gaps = 13/98 (13%)
Frame = +2
Query: 254 IYSELVDKYNAEYIAGGSVQNSLRVAQWILKKPNICTYFGCLGNDEYAKLLKERAIADGV 433
+Y+EL K N EYIAGGS QNS+RVAQW+L+ P +Y GC+G D++ + +K+ A G+
Sbjct: 75 MYNELASKVNVEYIAGGSTQNSIRVAQWMLQIPGATSYMGCIGKDKFGEEMKKDAQTAGL 134
Query: 434 H-------------VQYQVSNEVATGTCAVLVTGTHRS 508
H Y + TGTCAV + G RS
Sbjct: 135 HHCTYCLDLTIFKQAHYYEDDNAPTGTCAVCIVGGERS 172
Score = 75.4 bits (177), Expect = 5e-14
Identities = 32/64 (50%), Positives = 45/64 (70%)
Frame = +1
Query: 580 IEAAKFFYASGFFVAVSPESILLLAQHAHDNGHTFVMNLSAPFVSQFYKEPLEKLLPYVD 759
+E AK+ Y +GFF+ VSP+SI L+A+HA F+MNLSAPF+ +F+++ EK LPY D
Sbjct: 215 VEKAKYIYIAGFFLTVSPDSIQLVAEHAAATNKVFMMNLSAPFICEFFRDAQEKALPYAD 274
Query: 760 VSSG 771
G
Sbjct: 275 YIFG 278
Score = 41.1 bits (92), Expect = 0.001
Identities = 20/32 (62%), Positives = 23/32 (71%)
Frame = +3
Query: 129 EGLLVGIGNPLLDISASVDEDLLKKYDLHPDD 224
EG+L+G+GNPLLDISA VDE L L DD
Sbjct: 7 EGVLLGMGNPLLDISAVVDEAFLANSVLENDD 38
>10_08_0259 + 16274430-16274747,16275180-16275242,16275329-16275424,
16275526-16275618,16276415-16276605,16276684-16276921,
16277805-16277900,16278324-16278404,16278532-16278939,
16279048-16279331,16279460-16279547,16279630-16279830,
16280032-16280118,16280119-16280238,16280536-16280708,
16281914-16282055,16282292-16282414,16282601-16282656,
16282735-16283038,16283154-16283283,16283491-16283549,
16283829-16284061,16285480-16285527,16285765-16285843,
16285925-16286169,16286338-16286722
Length = 1446
Score = 29.5 bits (63), Expect = 3.4
Identities = 22/91 (24%), Positives = 40/91 (43%)
Frame = +2
Query: 332 QWILKKPNICTYFGCLGNDEYAKLLKERAIADGVHVQYQVSNEVATGTCAVLVTGTHRSC 511
Q++LKK I +G + L R+ D V +++N + + H C
Sbjct: 850 QYLLKKWRIKGGVLLIGYSSFRNLSLGRSARDKT-VANEITNALQMWVLIQSIYICHNQC 908
Query: 512 APISVLHNTSHQIIYRKKNARKALKQRSSFM 604
P ++ + +H I R+ + +ALKQ F+
Sbjct: 909 GPDILVCDEAHIIKNRRADTTQALKQMVDFV 939
>04_03_0852 + 20289439-20289721,20289858-20290642
Length = 355
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = -1
Query: 674 PLSCACWANNNIDSGETATKKPEA*KNFAASMLFLHSSFCK 552
P +C+ NN SG T +P A M ++H CK
Sbjct: 51 PTVASCYNQNNTASGPDCTVEPRACPRGCRDMCYVHCPTCK 91
>05_04_0395 -
20921606-20921869,20921971-20922112,20922206-20922330,
20922758-20923984
Length = 585
Score = 28.7 bits (61), Expect = 6.0
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 726 GTARETSPICRRVFGNESEADAFAKAF 806
G RE P+C V+G + D + KAF
Sbjct: 310 GADREGHPVCYNVYGEFQDKDLYEKAF 336
>01_06_1519 +
37942389-37943702,37944142-37944266,37944358-37944499,
37944602-37944848,37946139-37946196,37947629-37947913,
37947988-37948120
Length = 767
Score = 28.7 bits (61), Expect = 6.0
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 726 GTARETSPICRRVFGNESEADAFAKAF 806
G RE P+C V+G + D + KAF
Sbjct: 339 GADREGHPVCYNVYGEFQDKDLYEKAF 365
>09_02_0435 -
9384225-9384412,9385084-9385133,9385209-9385274,
9385360-9385451,9385893-9385975,9386181-9386259,
9386888-9387115,9387196-9387297,9387719-9387854,
9387984-9388033,9389391-9389618
Length = 433
Score = 28.3 bits (60), Expect = 7.9
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Frame = -2
Query: 280 ILVNEFRVDGMCFSSAIMASSGCRSYFFSKSSSTLADMSN----KGFPMPTNNP 131
+L + V G +MA+ GC+ FS S++ N + FP+ +NP
Sbjct: 114 LLYYDHNVAGTIILLEVMAAHGCKKLVFSSSAAVYGSPKNSPCTEEFPLTPHNP 167
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,950,339
Number of Sequences: 37544
Number of extensions: 490874
Number of successful extensions: 1354
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1353
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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