Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021111
         (830 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15351| Best HMM Match : No HMM Matches (HMM E-Value=.)              91   8e-19
SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.38 
SB_23807| Best HMM Match : DUF885 (HMM E-Value=6.6e-16)                29   4.6  
SB_39378| Best HMM Match : VWA (HMM E-Value=0)                         29   4.6  
SB_28917| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_34901| Best HMM Match : 7tm_1 (HMM E-Value=1.40004e-41)             29   6.1  
SB_27023| Best HMM Match : IncA (HMM E-Value=0.55)                     28   8.1  
SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11)                    28   8.1  
SB_28592| Best HMM Match : F5_F8_type_C (HMM E-Value=1.1e-24)          28   8.1  

>SB_15351| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 800

 Score = 91.5 bits (217), Expect = 8e-19
 Identities = 41/95 (43%), Positives = 60/95 (63%)
 Frame = +1

Query: 508 MCANLGAAQHFTPDHLQKEECKKSIEAAKFFYASGFFVAVSPESILLLAQHAHDNGHTFV 687
           + ANL AA ++T  HL + E    +  A FFY  GFF+ VSPESI+ + ++A +    F+
Sbjct: 565 LVANLAAANNYTKSHLDQPENWALVVKANFFYIGGFFLTVSPESIVAVGKYAAETDKLFM 624

Query: 688 MNLSAPFVSQFYKEPLEKLLPYVDVSSGMNRRQTL 792
           MNLSAPF+ QF+KEP+   +PY+D+  G    + L
Sbjct: 625 MNLSAPFLCQFFKEPMMNAMPYIDILFGNETTEDL 659



 Score = 55.2 bits (127), Expect = 6e-08
 Identities = 23/44 (52%), Positives = 30/44 (68%)
 Frame = +2

Query: 377 LGNDEYAKLLKERAIADGVHVQYQVSNEVATGTCAVLVTGTHRS 508
           +G D + K L + A A GVHV Y ++ E+ TGTCAV +TG HRS
Sbjct: 521 IGEDAFGKTLTDIATAAGVHVNYLINKEIPTGTCAVCITGKHRS 564



 Score = 41.9 bits (94), Expect = 6e-04
 Identities = 14/26 (53%), Positives = 22/26 (84%)
 Frame = +2

Query: 257 YSELVDKYNAEYIAGGSVQNSLRVAQ 334
           Y E++DK+N +Y+ GG+ QNS+R+AQ
Sbjct: 44  YQEMIDKFNVDYLPGGATQNSIRIAQ 69


>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1480

 Score = 32.7 bits (71), Expect = 0.38
 Identities = 30/88 (34%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
 Frame = +3

Query: 522  RCCTTLHTRSFTERRMQEKH*SSEVLLCFWFLCGSFSRVDIVIGPACAR*WT--YVCYEL 695
            R C+ + +R FT       H S  V L   F C   S    V+ P C+R +T  Y C  L
Sbjct: 1070 RVCSPVCSRVFTCLSACV-HLSVRVCLPVCFSCVHLSVR--VLSPVCSRVFTCLYACVHL 1126

Query: 696  ECALCLTVL*G----TARETSPICRRVF 767
               +CL V       + R  SP+C RVF
Sbjct: 1127 SVRVCLPVCFSCVHLSVRVLSPVCPRVF 1154



 Score = 31.5 bits (68), Expect = 0.87
 Identities = 25/69 (36%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
 Frame = +3

Query: 579  H*SSEVLLCFWFLCGSFSRVDIVIGPACAR*WT--YVCYELECALCLTVL*G----TARE 740
            H S  V L   F C   S    V+ P C R +T  Y C  L   +CL V       + R 
Sbjct: 1125 HLSVRVCLPVCFSCVHLSVR--VLSPVCPRVFTCLYACVNLSVCVCLPVCFSCVHLSVRV 1182

Query: 741  TSPICRRVF 767
             SP+C RVF
Sbjct: 1183 LSPVCPRVF 1191


>SB_23807| Best HMM Match : DUF885 (HMM E-Value=6.6e-16)
          Length = 879

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = +3

Query: 99  MDVSDSICDQEGLLVGIGNPLLDISASVDEDLLK 200
           M+VSDSI D   L+ G+G PLLD+   ++ D ++
Sbjct: 317 MNVSDSILD--ALVKGLGQPLLDLINYLEGDHMR 348


>SB_39378| Best HMM Match : VWA (HMM E-Value=0)
          Length = 2865

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +2

Query: 224  CHYG*RKTHAIYSELVDKYNAEYIAGGSVQNSLRVAQW 337
            C Y  ++   I S     +NAE+   GSV NSLRV  W
Sbjct: 1628 CCYDPKELKVIASSADHVFNAEFDELGSVFNSLRVRIW 1665


>SB_28917| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 295

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 549 IWCEVLCSTEIGAHERCVPVTSTAHVPVATSFD 451
           IWCE+L   +  A E+  P TS+ H  +    D
Sbjct: 72  IWCELLSDDKFNASEKFKPNTSSNHYSIPNPCD 104


>SB_34901| Best HMM Match : 7tm_1 (HMM E-Value=1.40004e-41)
          Length = 686

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 20/85 (23%), Positives = 35/85 (41%)
 Frame = +3

Query: 18  ILTFECGKLVKTF*FWYDLRPHNLYYIMDVSDSICDQEGLLVGIGNPLLDISASVDEDLL 197
           IL  +C + +    F    RPH   Y  D ++S C + G L    +P   I+ ++  ++L
Sbjct: 239 ILLTQCFRYILFVLFLIGKRPHLKGYSYDFTESYCSERGRLTPSCDPPYKINITI--EVL 296

Query: 198 KKYDLHPDDAIMAEEKHMPSTRNSL 272
            K     D  + +         NS+
Sbjct: 297 NKVSYKKDSQLRSIISEASMISNSI 321


>SB_27023| Best HMM Match : IncA (HMM E-Value=0.55)
          Length = 933

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 15/62 (24%), Positives = 27/62 (43%)
 Frame = +3

Query: 132 GLLVGIGNPLLDISASVDEDLLKKYDLHPDDAIMAEEKHMPSTRNSLTSIMQSILLVEAF 311
           G+ V +G PL  ++  V   L  +   H D  ++AE K    +     ++    +  E F
Sbjct: 794 GIGVLVGGPLAGVAGIVSRGLTSEVAKHEDTMVLAESKKNSISEQVSKALQDGHISDEEF 853

Query: 312 RI 317
           R+
Sbjct: 854 RL 855


>SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11)
          Length = 1771

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 21/64 (32%), Positives = 25/64 (39%)
 Frame = +3

Query: 537 LHTRSFTERRMQEKH*SSEVLLCFWFLCGSFSRVDIVIGPACAR*WTYVCYELECALCLT 716
           L  R F     + +  SSE   CFW  C S       + P+  R W   C  L C L  T
Sbjct: 545 LSPRLFRSLNNRARAFSSEA--CFWVTCSSH-----FLPPSAVRYWAKACAVLTCLLGTT 597

Query: 717 VL*G 728
            L G
Sbjct: 598 WLLG 601


>SB_28592| Best HMM Match : F5_F8_type_C (HMM E-Value=1.1e-24)
          Length = 428

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +3

Query: 12  GFILTFECGKLVKTF*FWYDLRPHNLYYIMDVSDSICDQEGLLVG 146
           G+I   +C + +    F    RPH   Y  D ++S C++ G  +G
Sbjct: 362 GWISLTQCVRYILFVLFLIGNRPHLQGYFYDFTESYCNERGRRIG 406


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,009,853
Number of Sequences: 59808
Number of extensions: 594345
Number of successful extensions: 1620
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1610
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2335516755
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)