Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021111
(830 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81107-6|CAB03230.1| 342|Caenorhabditis elegans Hypothetical pr... 110 1e-24
U50300-1|AAC48108.2| 349|Caenorhabditis elegans Serpentine rece... 30 1.8
AC006615-7|AAK68227.1| 450|Caenorhabditis elegans Hypothetical ... 29 5.4
Z70270-5|CAE17743.1| 181|Caenorhabditis elegans Hypothetical pr... 28 7.1
AF038615-2|AAB94145.1| 782|Caenorhabditis elegans Hypothetical ... 28 7.1
Z81460-5|CAB03832.1| 952|Caenorhabditis elegans Hypothetical pr... 28 9.4
Z70209-3|CAA94147.1| 952|Caenorhabditis elegans Hypothetical pr... 28 9.4
U40411-3|AAC47066.2| 270|Caenorhabditis elegans Hypothetical pr... 28 9.4
>Z81107-6|CAB03230.1| 342|Caenorhabditis elegans Hypothetical
protein R07H5.8 protein.
Length = 342
Score = 110 bits (265), Expect = 1e-24
Identities = 55/121 (45%), Positives = 76/121 (62%), Gaps = 1/121 (0%)
Frame = +2
Query: 242 KTHAIYSELVDKYNAEYIAGGSVQNSLRVAQWILKKPNICTYFGCLGNDEYAKLLKERAI 421
K + +++EL + EYI GG+ QNSLRVAQWIL PN +FG +G D+Y LL +A
Sbjct: 44 KHNDMFTELTRDFKVEYIPGGAAQNSLRVAQWILNAPNRTVFFGAVGKDQYGDLLASKAK 103
Query: 422 ADGVHVQYQVSNEVATGTCAVLVTGTHRS-CAPISVLHNTSHQIIYRKKNARKALKQRSS 598
GV+V YQ++ V TGTCA L+ GTHRS CA ++ NT Q +K+ +K ++Q
Sbjct: 104 EAGVNVHYQINETVKTGTCAALINGTHRSLCAHLAAA-NTFTQDHLQKEENQKIIEQAKY 162
Query: 599 F 601
F
Sbjct: 163 F 163
Score = 105 bits (253), Expect = 3e-23
Identities = 48/88 (54%), Positives = 64/88 (72%)
Frame = +1
Query: 508 MCANLGAAQHFTPDHLQKEECKKSIEAAKFFYASGFFVAVSPESILLLAQHAHDNGHTFV 687
+CA+L AA FT DHLQKEE +K IE AK+FY +GFF+ V P +IL LA H+ + TF
Sbjct: 133 LCAHLAAANTFTQDHLQKEENQKIIEQAKYFYVTGFFITVCPPAILQLASHSAEFNKTFT 192
Query: 688 MNLSAPFVSQFYKEPLEKLLPYVDVSSG 771
+NLSAPF+SQF+ + L +++P VDV G
Sbjct: 193 LNLSAPFISQFFFDKLSEIIPLVDVLFG 220
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/40 (45%), Positives = 28/40 (70%)
Frame = +3
Query: 129 EGLLVGIGNPLLDISASVDEDLLKKYDLHPDDAIMAEEKH 248
E L+G+ NPLLDI +V++ L K+ L +DAI+ ++KH
Sbjct: 6 ENTLIGMCNPLLDIQTTVEKAFLDKWGLKENDAILCDDKH 45
>U50300-1|AAC48108.2| 349|Caenorhabditis elegans Serpentine
receptor, class x protein3 protein.
Length = 349
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/71 (21%), Positives = 31/71 (43%)
Frame = +2
Query: 422 ADGVHVQYQVSNEVATGTCAVLVTGTHRSCAPISVLHNTSHQIIYRKKNARKALKQRSSF 601
+D + S+ + +G C + + T +PI RKK+ R A++ +
Sbjct: 175 SDEFDIPLNASSSIISGLCYIKIFWTQHKSSPICPTFAAEQLKRRRKKDIRYAIQFSLTL 234
Query: 602 MLLVSLWQFLQ 634
+ + +W FL+
Sbjct: 235 VFYIFVWVFLR 245
>AC006615-7|AAK68227.1| 450|Caenorhabditis elegans Hypothetical
protein C36B7.1 protein.
Length = 450
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Frame = -2
Query: 673 HYR-AHAG---PITISTLEKLPQRNQKHKRTSLLQCF 575
HY+ AH P+T S + KLP NQK L++CF
Sbjct: 388 HYKLAHPSRKPPLTSSLVSKLPGGNQKFLARFLMRCF 424
>Z70270-5|CAE17743.1| 181|Caenorhabditis elegans Hypothetical
protein C53D6.8 protein.
Length = 181
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = -2
Query: 256 DGMCFSSAIMASSGCRSYFFSKSSSTLADMSNKGFPMPTNNPSWSHMESETS 101
DG F + + GCR + S L ++N G P+ N P W + E S
Sbjct: 24 DGQVFYEDVK-TYGCRCLQKDQRSQLLNSLTN-GIPLNANRPIWKPLSREPS 73
>AF038615-2|AAB94145.1| 782|Caenorhabditis elegans Hypothetical
protein R02D3.4 protein.
Length = 782
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/51 (23%), Positives = 25/51 (49%)
Frame = +2
Query: 437 VQYQVSNEVATGTCAVLVTGTHRSCAPISVLHNTSHQIIYRKKNARKALKQ 589
V+Y + A + + VT R P+ + N + I+Y + N ++ ++Q
Sbjct: 141 VRYSANKRTAQNSEVIRVTRELRGLPPLPTVQNAGNLIMYTRLNTQEEMEQ 191
>Z81460-5|CAB03832.1| 952|Caenorhabditis elegans Hypothetical
protein C04A11.4 protein.
Length = 952
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1
Query: 601 YASGFFVAVSPESILLLAQHAHDNGHTFVMN 693
Y+ G +V + +++ +A AH+ GHTF M+
Sbjct: 291 YSGGIYVDHNNDTVETVATFAHELGHTFGMD 321
>Z70209-3|CAA94147.1| 952|Caenorhabditis elegans Hypothetical
protein C04A11.4 protein.
Length = 952
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1
Query: 601 YASGFFVAVSPESILLLAQHAHDNGHTFVMN 693
Y+ G +V + +++ +A AH+ GHTF M+
Sbjct: 291 YSGGIYVDHNNDTVETVATFAHELGHTFGMD 321
>U40411-3|AAC47066.2| 270|Caenorhabditis elegans Hypothetical
protein B0403.3 protein.
Length = 270
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -2
Query: 310 NASTSNILCIILVNEFRVDGMCFSSAIMASSGCRSYFFS 194
N + I C L +E+ + +C SA+ A S +SY+ S
Sbjct: 171 NKHCNVIACYQLCHEYIISKVCIDSAVAARSVVKSYYDS 209
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,999,357
Number of Sequences: 27780
Number of extensions: 440050
Number of successful extensions: 1229
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1229
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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