Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021110
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    38   0.002
SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyce...    30   0.35 
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    29   0.82 
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo...    28   1.1  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    27   1.9  
SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces pom...    27   3.3  
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c...    26   5.8  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    26   5.8  
SPBC23E6.06c |||3,4-dihydroxy-2-butanone 4-phosphate synthase |S...    25   7.6  
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi...    25   7.6  

>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 15/70 (21%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
 Frame = +2

Query: 77  IEHKIRNLEKRKSKLT-SYRD-LQKAGKELNSDQKVAVAKYDEVAQTLEFARDLSKQVTA 250
           + H++ +L+  +  L   + D ++K   E+++   + + K DE+ ++++   +L +++ +
Sbjct: 110 LSHEVNDLQTDRENLKHQFEDQIEKLNSEISNQNSLILQKKDELEKSIQRCSELEEKINS 169

Query: 251 IESLQSVRQK 280
           +ES QS+ Q+
Sbjct: 170 LESAQSIEQE 179


>SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 205

 Score = 29.9 bits (64), Expect = 0.35
 Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
 Frame = +2

Query: 5   ANAKSEKPASSEDKDTPIRQIMTIIEHKIR--NLEKRKSKLTSYRDLQKAGKELNSDQKV 178
           A+  +++   ++++DTP+  +    +  +R  N EK+ SKL + R  ++  KE+      
Sbjct: 72  ADILNQQVTQTDEQDTPVLSLSKKSKKALRKSNAEKKDSKLRTSRRRERLRKEMVGRVTS 131

Query: 179 AVAKYDEVAQTL 214
            VA   E A+ L
Sbjct: 132 VVAVNAETAKAL 143


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 19/50 (38%), Positives = 25/50 (50%)
 Frame = -3

Query: 518 VKTNCPSSFNSCLGVTSGYKSSKIFKSSSVNVAAPFVPFMKSVLASALPI 369
           V  N  SSF      TS Y+ S+ FK SSV + +     +    AS+LPI
Sbjct: 434 VSNNTQSSFLIISTFTSSYEHSEPFKVSSVPLTSNNFSSISHSSASSLPI 483


>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
           Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 388

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = +2

Query: 98  LEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDEVAQTLEFARDLSKQV-TAIESLQSVR 274
           LEK KS L  +R+     K+L    +  V KYD+    ++  + + + +   ++ L S R
Sbjct: 8   LEKYKSYLLQHREWDSKLKDLRFGNRDLVKKYDKTEDDIKSLQSVGQIIGEVLKQLDSER 67

Query: 275 QKNKLKRKPGFVM 313
              K    P +V+
Sbjct: 68  FIVKASSGPRYVV 80


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 23/80 (28%), Positives = 43/80 (53%)
 Frame = +2

Query: 2   AANAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVA 181
           A N+K+ + + SE+ +  I ++   ++ + RN   R+ KL    DL+K+ K+     K+ 
Sbjct: 533 AINSKNVQQSRSEELEQQISKLTDNLQ-EYRNTV-RELKL----DLEKSKKKNEDLSKLE 586

Query: 182 VAKYDEVAQTLEFARDLSKQ 241
           V K +E+A   +    L+KQ
Sbjct: 587 VEKVEEIANLKKELTHLAKQ 606


>SPAC30D11.07 |nth1||DNA endonuclease III|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 355

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -3

Query: 539 CSSCYLKVKTNCPSSFNSCLGVTSGYKSSKIFK 441
           C  C L  K  CPS+F    G+T   +  K  K
Sbjct: 217 CDMCTLSSKGLCPSAFKEKSGITITKRKVKTIK 249


>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 436

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
 Frame = +2

Query: 26  PASSEDKDTPI--RQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDE 199
           P   ED   P    Q    I       +K+K+      +LQ AGK+L + Q+   A Y +
Sbjct: 134 PTDQEDPRNPQLDSQYEAFITQGESQTDKKKTSTVQEEELQNAGKKLETVQENPQA-YSK 192

Query: 200 VAQ 208
           V Q
Sbjct: 193 VTQ 195


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/74 (20%), Positives = 39/74 (52%)
 Frame = +2

Query: 83  HKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDEVAQTLEFARDLSKQVTAIESL 262
           H++ N+EK + KLT    +  +  +   DQ++  ++      T   +++  ++ T ++ +
Sbjct: 784 HELENIEKIEEKLTEVDKVSLS--DAFPDQEIKNSRTSVQNGTRSVSKNTPEKETKVDKI 841

Query: 263 QSVRQKNKLKRKPG 304
            +V +K+ ++  PG
Sbjct: 842 DNVSKKD-VETSPG 854


>SPBC23E6.06c |||3,4-dihydroxy-2-butanone 4-phosphate synthase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 204

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +1

Query: 367 QMGSADART-DFINGTNGAATLTEDDLKILDDLYPEVTPKHELNEEGQLV 513
           +M +A A T D+ NGT    +  +  L       PEVT   E N  G +V
Sbjct: 79  RMRTAYAVTLDYANGTTTGISAHDRALTTRQLANPEVTSPREFNRPGHIV 128


>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
           Tea4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 17/76 (22%), Positives = 36/76 (47%)
 Frame = +2

Query: 11  AKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAK 190
           A   K ASS   D+P+R+ +++      +  +  +  +SY          N+D+ +  + 
Sbjct: 379 ANKHKTASSATVDSPLRRSLSV------DAMQSNASFSSYSSTS------NTDKSLRPSS 426

Query: 191 YDEVAQTLEFARDLSK 238
           Y  V+++  F  D+S+
Sbjct: 427 YSAVSESSNFTHDVSR 442


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,592,249
Number of Sequences: 5004
Number of extensions: 49573
Number of successful extensions: 170
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)