Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021110
         (679 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0310 + 29135875-29136052,29136206-29136617,29136723-291368...    31   0.64 
12_01_1059 - 10934937-10935446,10938224-10938271,10938383-109386...    29   2.6  
10_08_0426 - 17817975-17818582,17819068-17819209,17819648-178197...    29   3.4  
11_06_0197 + 21149453-21149630,21149930-21149996,21150142-211502...    29   4.5  
03_03_0114 - 14554964-14555136,14556317-14556474,14557413-145574...    28   6.0  
03_06_0054 + 31313348-31313560,31313662-31313856,31313933-313140...    28   7.9  

>05_07_0310 +
           29135875-29136052,29136206-29136617,29136723-29136867,
           29137944-29138102,29138183-29138242,29138349-29138546
          Length = 383

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
 Frame = +2

Query: 20  EKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQK--AGKELNSDQKVAVAK- 190
           E P + E++  P  + MT+ E++    EKRK+ L    + +K    KEL + Q+++V K 
Sbjct: 231 ESPENEEEEKEPEDKEMTLEEYEKVLEEKRKALLALKAEERKVEVDKELQAMQQLSVKKA 290

Query: 191 YDEVAQTLEFARDLSKQ 241
            +EV   L   +DL K+
Sbjct: 291 NEEVFIKLGSDKDLKKK 307


>12_01_1059 -
           10934937-10935446,10938224-10938271,10938383-10938619,
           10938711-10938747,10941018-10941286
          Length = 366

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +2

Query: 17  SEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELN 163
           S K     +K  P R  M  +EH+  N+EK      S+  ++K+ + ++
Sbjct: 290 SRKSTDRREKSRPTRDRMRGVEHRYSNVEKTDKLKFSFDHMEKSRRSID 338


>10_08_0426 -
           17817975-17818582,17819068-17819209,17819648-17819745,
           17820070-17821897,17822331-17822738,17822891-17822943,
           17823461-17823877,17824401-17824605
          Length = 1252

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = +2

Query: 17  SEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAK 190
           S +  S    D P+  I+T + HK R   + K    S+     A K+L+ D +V V +
Sbjct: 475 SYRSDSQGSTDNPLYDILTKLIHKTRPAHRSKKTKISFVAKDVAIKKLSDDSEVQVVE 532


>11_06_0197 +
           21149453-21149630,21149930-21149996,21150142-21150244,
           21150901-21150971,21151091-21151154,21151239-21151304,
           21151416-21151463,21151544-21151606,21151680-21151736,
           21151884-21151950,21151969-21152042,21152176-21152244,
           21152323-21152414,21152782-21152860,21153233-21153398,
           21153826-21153950,21154089-21154351,21154473-21154569,
           21154659-21154820,21154904-21155008,21155935-21156180
          Length = 753

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 540 EHLYSIIDGKPKEVLGTTYLRIKEIVSTV 626
           EH  SI++ K +E  G   +R+KE  STV
Sbjct: 527 EHARSIVEEKAREEAGNVLMRMKERFSTV 555


>03_03_0114 -
           14554964-14555136,14556317-14556474,14557413-14557486,
           14557589-14557703,14557818-14558054,14558157-14558233
          Length = 277

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +2

Query: 14  KSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGK 154
           K     SS    T I ++   IE+K+RN+E+ ++     ++ + AGK
Sbjct: 146 KKNSEESSTQWTTGIAEVQLPIEYKLRNIEETEAAKKMLQEKRLAGK 192


>03_06_0054 +
           31313348-31313560,31313662-31313856,31313933-31314098,
           31314193-31314599
          Length = 326

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +1

Query: 343 LLILDCLMQMGSADARTDFINGT 411
           LL++  + Q+G++D RTD+ N T
Sbjct: 12  LLVVAAVAQLGASDLRTDYYNST 34


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,773,385
Number of Sequences: 37544
Number of extensions: 283599
Number of successful extensions: 757
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)