Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021110
(679 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58404| Best HMM Match : No HMM Matches (HMM E-Value=.) 74 1e-13
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32) 32 0.37
SB_51224| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.65
SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09) 31 0.65
SB_22971| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23) 31 1.1
SB_30986| Best HMM Match : 7tm_1 (HMM E-Value=0) 30 1.5
SB_22653| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_1948| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_933| Best HMM Match : ExoD (HMM E-Value=6) 29 3.5
SB_46602| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_26444| Best HMM Match : CAP_GLY (HMM E-Value=1.2e-23) 29 3.5
SB_51986| Best HMM Match : HLH (HMM E-Value=0.15) 29 4.6
SB_38795| Best HMM Match : M (HMM E-Value=2.4e-07) 29 4.6
SB_33134| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_56042| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_41836| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.5e-07) 28 6.0
SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19) 28 6.0
SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.0
>SB_58404| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 532
Score = 73.7 bits (173), Expect = 1e-13
Identities = 41/104 (39%), Positives = 59/104 (56%), Gaps = 3/104 (2%)
Frame = +2
Query: 17 SEKPASSE---DKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVA 187
S KP+ S+ D + + ++E K+RNLEKRK KL Y+ +G+ELN+DQK A+A
Sbjct: 5 SSKPSDSQALMDSSDIAKSGLLLVEKKVRNLEKRKLKLDGYKKQMDSGQELNADQKAAIA 64
Query: 188 KYDEVAQTLEFARDLSKQVTAIESLQSVRQKNKLKRKPGFVMQQ 319
D V L+ A+DL KQ + S + RQ+ K R+ QQ
Sbjct: 65 NLDVVEMNLDMAKDLLKQFQQMHS-EYQRQQKKQARRDQVAQQQ 107
Score = 54.8 bits (126), Expect = 6e-08
Identities = 28/61 (45%), Positives = 37/61 (60%)
Frame = +1
Query: 307 RYAAETNKIKEVLLILDCLMQMGSADARTDFINGTNGAATLTEDDLKILDDLYPEVTPKH 486
++ A+ K+ EVL L LM S D RTDF+NGTNGA +TED +D+ Y +TP
Sbjct: 109 QHNADVLKVNEVLE-LQHLMDSLSEDVRTDFLNGTNGAVVVTEDQFVQIDEFYKLITPDE 167
Query: 487 E 489
E
Sbjct: 168 E 168
>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
Length = 2436
Score = 32.3 bits (70), Expect = 0.37
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Frame = +2
Query: 44 KDTPIRQIMTIIEHKIRNLEKRKSKLTSY-RDLQKAGKELNSDQKVAVAK 190
KD+ ++ ++ E KIR L+KR S+L S R L+ K+L D+K A+ K
Sbjct: 322 KDSGNQKATSLGEEKIRKLKKRNSELVSIARQLEDKAKKL-QDEKNAILK 370
>SB_51224| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 808
Score = 31.5 bits (68), Expect = 0.65
Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 11/113 (9%)
Frame = +2
Query: 17 SEKPASSEDKDTPIRQIMTIIEHKIRNLEKR--KSKLTSYRDLQKAGKELNSDQKVAVAK 190
SE S +D+ + + +E ++ L SKL + DL A +L ++ V +
Sbjct: 587 SENSQSMQDRILKLEEERNSLEVEVSRLRSELVSSKLKADEDLMNAKTKLKQEELVRSRQ 646
Query: 191 YDEVAQTL-----EFARDLSKQVTAIESLQS----VRQKNKLKRKPGFVMQQR 322
YDE L E +KQ + I LQS + ++N++ ++ M+Q+
Sbjct: 647 YDERIHLLQTSFEELQLQSTKQQSKISELQSQLSAITRENEINKRQLETMKQQ 699
>SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)
Length = 1103
Score = 31.5 bits (68), Expect = 0.65
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Frame = +2
Query: 17 SEKPASSEDKDTPIRQIMTIIEHKIRNLEK-RKSKLTSYRDLQKAGKELNSDQKVAVAKY 193
SE A ++KD + + + + KI+ + +KSK +L KAGK + + V K
Sbjct: 861 SESEAEDDEKD--VEEKHEVKQDKIKKKKHDKKSKAKDKDNLAKAGKAIQAILDVTTRKK 918
Query: 194 DEVAQTLEFARDLSKQVTAIESLQS 268
+ AQ+L+ V A + ++S
Sbjct: 919 ADAAQSLQTCPGSCPDVCAPQCMES 943
>SB_22971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 116
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/46 (30%), Positives = 27/46 (58%)
Frame = +2
Query: 80 EHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDEVAQTLE 217
+ KIRNL+K+ ++ + QKAGK+L +Q + D + + ++
Sbjct: 65 DKKIRNLKKKLRQIEELKTQQKAGKQLEVNQLEKLKNEDALLKEIK 110
>SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)
Length = 3368
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/55 (23%), Positives = 30/55 (54%)
Frame = +2
Query: 17 SEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVA 181
+E+P + + T++++ + + ++ T +RD+Q+ GKE NSD ++
Sbjct: 1928 TEQPVAPSASLQTTKAEKTLVKNTAESTKYTETSSTQHRDIQQRGKEQNSDDALS 1982
>SB_30986| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 2682
Score = 30.3 bits (65), Expect = 1.5
Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 5/114 (4%)
Frame = +2
Query: 44 KDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQK-----VAVAKYDEVAQ 208
KD ++ + + ++ L R++ Y LQ E +K AVA E A+
Sbjct: 1065 KDPALQSLAQEVLSLVKGLVGREAMSEVYASLQHGVMETKEKRKRQRALEAVADPAESAR 1124
Query: 209 TLEFARDLSKQVTAIESLQSVRQKNKLKRKPGFVMQQRPTK*KKFYLFWIALCK 370
+F R+LSK+ T L +++ K+KR V + + F + W ++ +
Sbjct: 1125 R-KFKRNLSKKETRKRKLDALKPDRKMKRARSKVEKSQTPSLMCFVMTWKSISR 1177
>SB_22653| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 737
Score = 29.9 bits (64), Expect = 2.0
Identities = 28/103 (27%), Positives = 45/103 (43%)
Frame = +2
Query: 20 EKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDE 199
E A E I IEHKI+ LEK+ D Q + E N D+ + E
Sbjct: 451 EFEARQEQCSADIDSARRSIEHKIQRLEKK-------FDQQFSSTEKNMDKNDSSLPKKE 503
Query: 200 VAQTLEFARDLSKQVTAIESLQSVRQKNKLKRKPGFVMQQRPT 328
+ Q + DLS + + VR +++K + ++Q++PT
Sbjct: 504 IFQ--QIVTDLSDEFQKVTRNLEVR-TSEMKNELSVLVQEKPT 543
>SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2672
Score = 29.9 bits (64), Expect = 2.0
Identities = 21/75 (28%), Positives = 35/75 (46%)
Frame = +2
Query: 11 AKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAK 190
AK + E + I ++ +E LE+ + +L+ LQ KEL S++K K
Sbjct: 1684 AKKKNHEEEERLEAEIAELANTVETLRTELEQSQVRLSK---LQTQVKELKSEKKELQRK 1740
Query: 191 YDEVAQTLEFARDLS 235
DE+ + R+LS
Sbjct: 1741 VDELTSEAQRRRNLS 1755
>SB_1948| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 959
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -3
Query: 530 CYLKVKTNCPSSFNSCLGVTSGYKSSKIFKSS-SVNVAAP 414
C + T CPSS + +T G K++K F S +++ AP
Sbjct: 637 CIETISTKCPSSATTHPSITLGNKTTKYFASKYGLSITAP 676
>SB_933| Best HMM Match : ExoD (HMM E-Value=6)
Length = 555
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/50 (40%), Positives = 28/50 (56%)
Frame = -3
Query: 464 YKSSKIFKSSSVNVAAPFVPFMKSVLASALPICIRQSRISKTSFILLVSA 315
Y SS S++N++ PF+P+ V+ P +RQ I K FI LVSA
Sbjct: 82 YPSSMDGVDSTLNMS-PFIPY---VIRPKGPRLLRQGTIMKAGFIGLVSA 127
>SB_46602| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1805
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Frame = +2
Query: 80 EHKIRNLEKRKSKL-TSYRDLQKAGKELNSDQKVAVAKYD---EVAQ-TLEFARDLSKQV 244
E ++R L ++ KL T Y DL+K +++ ++ + + + EVAQ T E + L +
Sbjct: 889 EDELRTLREKLEKLETEYTDLEKKHSQISEEKAIVAEQLESEREVAQETEEMRQRLQTKK 948
Query: 245 TAIESLQS 268
+E L S
Sbjct: 949 NELEELLS 956
>SB_26444| Best HMM Match : CAP_GLY (HMM E-Value=1.2e-23)
Length = 1024
Score = 29.1 bits (62), Expect = 3.5
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Frame = +2
Query: 62 QIMTIIEHKIRNLE-KRKSKLTSYRDLQKAGKELNSDQKVAVAKYDEVAQTLEFARDLSK 238
+++ +E K+ L+ KR +DL+KA +L + +Y Q E RDL
Sbjct: 279 KVIVDLEGKLETLKAKRLEDKHKMKDLEKARMQLEQ-----MIEYKSKWQ--EAQRDLQN 331
Query: 239 QVTAIESLQSVRQKNK 286
Q+TA + L+ + Q+N+
Sbjct: 332 QLTAAKKLEGMMQENE 347
>SB_51986| Best HMM Match : HLH (HMM E-Value=0.15)
Length = 2110
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +2
Query: 38 EDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAK--YDEVAQT 211
E +D PI +I ++++ N+EK K ++D ++ GK +K K D+ QT
Sbjct: 208 EIEDEPINEISSLVDFVDENIEKSLLKDPLWQDEEEKGKRKKKKKKRKRDKSLQDQTCQT 267
Query: 212 L 214
+
Sbjct: 268 M 268
>SB_38795| Best HMM Match : M (HMM E-Value=2.4e-07)
Length = 1447
Score = 28.7 bits (61), Expect = 4.6
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Frame = +2
Query: 80 EHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDEVAQTLEFARDLSK-----QV 244
E ++ + K+KL ++QK K+ N D + ++++ L+ AR+ K +
Sbjct: 427 EKQLEEVTNEKNKLNL--EIQKMQKQHNDDMAELIKRFEDEKMKLDEARESEKAKTTQHL 484
Query: 245 TAIESLQSVRQKNKLKRK 298
T E + S ++ KLK K
Sbjct: 485 TKAERVLSEMEEIKLKMK 502
>SB_33134| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2208
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/67 (25%), Positives = 39/67 (58%)
Frame = +2
Query: 80 EHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDEVAQTLEFARDLSKQVTAIES 259
+ K+ NL+ + SKL + + Q+A K++ + +V+ E+ L+ +R+ ++ E
Sbjct: 894 DDKVNNLQAKISKLEADMNEQQASKDITAQDRVS-----ELKDLLKVSRESESKLQ--ER 946
Query: 260 LQSVRQK 280
++S+R+K
Sbjct: 947 IESLREK 953
>SB_56042| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 239
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/75 (24%), Positives = 37/75 (49%)
Frame = +2
Query: 74 IIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDEVAQTLEFARDLSKQVTAI 253
++EH+ LE R KLT RD ++ + N +A +K + + + L+ L K+ +
Sbjct: 140 VVEHRKDELEARNEKLTKERDALQS--DFNK-TTLAKSKLESLCRELQRHSKLVKEECQL 196
Query: 254 ESLQSVRQKNKLKRK 298
+ + ++ +L K
Sbjct: 197 RAAEEETKRKELSDK 211
>SB_41836| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.5e-07)
Length = 1128
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 38 EDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRD 136
ED++ IRQ+ IIE K ++E++ +L RD
Sbjct: 847 EDREDEIRQLRQIIEDKESDIEEQVMELIHLRD 879
>SB_27572| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.1e-19)
Length = 3107
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +2
Query: 122 TSYRDLQKAGKELNSDQKVAVAKYDEVAQTLEFA-RDLSKQ 241
+SY +QK +EL D A AK++E+ L+ A R+L K+
Sbjct: 497 SSYLAVQKEKEELQDDLLTAQAKFNELQAELDKAHRELQKE 537
Score = 28.3 bits (60), Expect = 6.0
Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Frame = +2
Query: 38 EDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDEVAQTLE 217
ED+D I ++ ++++ R++EK + ++ + + + + Q V+ +D++ L
Sbjct: 2038 EDRDAQINELEYVLKNFRRDMEKLQGEMVA---VNASSTDFKDQQLVSKKDFDKMQMDLI 2094
Query: 218 FA-RDLSKQVTAIESLQSVRQKNK 286
A R + T E+LQ R K K
Sbjct: 2095 AATRRTAHLETRNEALQQERDKLK 2118
>SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2193
Score = 27.9 bits (59), Expect = 8.0
Identities = 20/94 (21%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Frame = +2
Query: 8 NAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDL-QKAGKELNSDQKVAV 184
N K ++ +ED +++ ++ +E +NLE + RD+ + E +D +V
Sbjct: 1627 NEKQKQKEKAEDNLKALKKRISDLEVDNKNLETARDNAVYERDIANQKFVEQRTDNEVLK 1686
Query: 185 AKYDEVAQTLEFARDLSKQVTAIES-LQSVRQKN 283
+ +++ L +DL +V +E+ L+ ++++N
Sbjct: 1687 EEKEKLLMQL---KDLQNEVARLENQLEDLKKRN 1717
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,676,528
Number of Sequences: 59808
Number of extensions: 339321
Number of successful extensions: 827
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -