Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021110
         (679 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    32   0.019
AY280611-1|AAQ21364.1| 1102|Anopheles gambiae chloride/bicarbona...    28   0.31 
AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein pr...    26   0.95 
AB090814-1|BAC57903.1|  499|Anopheles gambiae gag-like protein p...    25   2.2  
AB090816-1|BAC57907.1|  455|Anopheles gambiae gag-like protein p...    24   5.1  

>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 31.9 bits (69), Expect = 0.019
 Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
 Frame = +2

Query: 14  KSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAK- 190
           + E+ A+ +D+   +R  +   EH+IRN E   +K  S  D  +A  E    + VA+ + 
Sbjct: 324 QEEQLAAVDDELKKLRTSIEEQEHRIRNREALVAKTDSTIDTYRADIESKKQEYVALKEA 383

Query: 191 YDEVAQTLEFARDLSKQVTAIE 256
           Y  V +TL+   D+  +  AIE
Sbjct: 384 YGTVRRTLQ---DVQAKQAAIE 402


>AY280611-1|AAQ21364.1| 1102|Anopheles gambiae chloride/bicarbonate
            anion exchanger protein.
          Length = 1102

 Score = 27.9 bits (59), Expect = 0.31
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +1

Query: 430  TEDDLKILDDLYPEVTPKHELNEEGQL 510
            T+ +LKILDD+ PE+T +   ++  QL
Sbjct: 1029 TKRELKILDDIMPEMTKRARADDLHQL 1055


>AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein
           protein.
          Length = 476

 Score = 26.2 bits (55), Expect = 0.95
 Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
 Frame = +2

Query: 128 YRDLQKAGKELNSDQKVAVA------KYDEVAQTLEFAR--DLSKQVTAIESLQSVRQKN 283
           +  L  AG+EL+S  KVA+        YD +  TLE     DL+ ++   + L   +++ 
Sbjct: 125 FSSLMNAGQELDSSLKVAMVLKSMPESYDHLTTTLETRSDDDLTMELVKSKLLDEAQKRM 184

Query: 284 KLKRKPGFVMQQRPTK 331
           +   +   +++  P K
Sbjct: 185 EKSHQSESILRVGPEK 200


>AB090814-1|BAC57903.1|  499|Anopheles gambiae gag-like protein
           protein.
          Length = 499

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +2

Query: 152 KELNSDQKVAVAKYDEVAQTLEFARDLSKQVTAIE 256
           K L   + V +   DE  +  +  RDL  Q+T +E
Sbjct: 343 KSLGQMETVEIRFIDEETEAADVERDLRNQITGLE 377


>AB090816-1|BAC57907.1|  455|Anopheles gambiae gag-like protein
           protein.
          Length = 455

 Score = 23.8 bits (49), Expect = 5.1
 Identities = 23/102 (22%), Positives = 46/102 (45%)
 Frame = +2

Query: 20  EKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDE 199
           E    +E     + Q+  ++E K+R  E+R+       D Q+  +E  + ++   AK D 
Sbjct: 47  ETRKKNESLQEQLTQLRWLMEEKLR--EQRE-------DAQR--REEEARRREEAAKADN 95

Query: 200 VAQTLEFARDLSKQVTAIESLQSVRQKNKLKRKPGFVMQQRP 325
               +E     +  +     L+ ++QKN++KR+      Q+P
Sbjct: 96  EKLRVEQQETHTTLIAISAQLRDLQQKNQMKRQQQHQPPQQP 137


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 637,028
Number of Sequences: 2352
Number of extensions: 10820
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 68159265
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)