Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021110
         (679 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical pr...    33   0.25 
X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy ch...    33   0.25 
U41549-3|AAA83283.2|  245|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z68105-6|CAA92119.4| 1340|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z68010-4|CAJ76939.1| 1340|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AY436362-1|AAR30497.1| 1293|Caenorhabditis elegans RhoGEF protein.     29   3.0  
Z81514-5|CAB04192.2|  611|Caenorhabditis elegans Hypothetical pr...    28   5.3  
L11247-4|AAK84520.1|  392|Caenorhabditis elegans Hypothetical pr...    28   7.0  
U97194-8|AAB52447.3| 1254|Caenorhabditis elegans Prion-like-(q/n...    27   9.3  

>Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical protein
            K12F2.1 protein.
          Length = 1969

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = +2

Query: 17   SEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYR-DLQKAGKELNSDQKVAVAKY 193
            +E   S EDK   + +I   +E ++  LE+   +    R D++KA +++  D KVA    
Sbjct: 1020 NEDLQSEEDKVNHLEKIRNKLEQQMDELEENIDREKRSRGDIEKAKRKVEGDLKVAQENI 1079

Query: 194  DEVAQ 208
            DE+ +
Sbjct: 1080 DEITK 1084


>X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy chain 3
            protein.
          Length = 1969

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = +2

Query: 17   SEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYR-DLQKAGKELNSDQKVAVAKY 193
            +E   S EDK   + +I   +E ++  LE+   +    R D++KA +++  D KVA    
Sbjct: 1020 NEDLQSEEDKVNHLEKIRNKLEQQMDELEENIDREKRSRGDIEKAKRKVEGDLKVAQENI 1079

Query: 194  DEVAQ 208
            DE+ +
Sbjct: 1080 DEITK 1084


>U41549-3|AAA83283.2|  245|Caenorhabditis elegans Hypothetical
           protein F22F1.3 protein.
          Length = 245

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/22 (68%), Positives = 15/22 (68%)
 Frame = +3

Query: 3   LLMQNLKSRPLRRIRIHQFDKL 68
           LL  N KSR  RRIRIH  DKL
Sbjct: 128 LLKPNAKSRITRRIRIHVIDKL 149


>Z68105-6|CAA92119.4| 1340|Caenorhabditis elegans Hypothetical
           protein F13E6.6 protein.
          Length = 1340

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -3

Query: 542 FCSSCYLKVKTNCPSSF-NSCLGVTSGYKSSK 450
           FCS+C +KV  +C S+  ++C  VT   + SK
Sbjct: 514 FCSNCDVKVHPHCTSALTDACYPVTQSKQKSK 545


>Z68010-4|CAJ76939.1| 1340|Caenorhabditis elegans Hypothetical
           protein F13E6.6 protein.
          Length = 1340

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -3

Query: 542 FCSSCYLKVKTNCPSSF-NSCLGVTSGYKSSK 450
           FCS+C +KV  +C S+  ++C  VT   + SK
Sbjct: 514 FCSNCDVKVHPHCTSALTDACYPVTQSKQKSK 545


>Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical
           protein F59A2.6 protein.
          Length = 1133

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
 Frame = +2

Query: 8   NAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVA 187
           NAK +     E+K T I++    ++   + ++  K +L   +   ++ +EL S QK    
Sbjct: 367 NAKEDLKVVEEEKHTGIQRAQGALDDAEKEVKVLKEQLERAQSALESSQELASSQK--AD 424

Query: 188 KYDEVAQTLEFARDLSKQ--VTAIESLQSV 271
           K  E+ + L+ A+  S +   TA E ++S+
Sbjct: 425 KIQELEKELQNAQKRSSEELETANEMVRSL 454


>Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical
           protein F59A2.6 protein.
          Length = 1133

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
 Frame = +2

Query: 8   NAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVA 187
           NAK +     E+K T I++    ++   + ++  K +L   +   ++ +EL S QK    
Sbjct: 367 NAKEDLKVVEEEKHTGIQRAQGALDDAEKEVKVLKEQLERAQSALESSQELASSQK--AD 424

Query: 188 KYDEVAQTLEFARDLSKQ--VTAIESLQSV 271
           K  E+ + L+ A+  S +   TA E ++S+
Sbjct: 425 KIQELEKELQNAQKRSSEELETANEMVRSL 454


>AY436362-1|AAR30497.1| 1293|Caenorhabditis elegans RhoGEF protein.
          Length = 1293

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -3

Query: 542 FCSSCYLKVKTNCPSSF-NSCLGVTSGYKSSK 450
           FCS+C +KV  +C S+  ++C  VT   + SK
Sbjct: 467 FCSNCDVKVHPHCTSALTDACYPVTQSKQKSK 498


>Z81514-5|CAB04192.2|  611|Caenorhabditis elegans Hypothetical
           protein F26F2.6 protein.
          Length = 611

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 9/39 (23%), Positives = 23/39 (58%)
 Frame = +3

Query: 519 LQITRAAEHLYSIIDGKPKEVLGTTYLRIKEIVSTVHEC 635
           L   +   + + +IDG+P +++ +T +++K+    V +C
Sbjct: 14  LAAQKGPSYKFGVIDGEPIDLINSTSVQVKDFDECVEKC 52


>L11247-4|AAK84520.1|  392|Caenorhabditis elegans Hypothetical
           protein F09G8.3 protein.
          Length = 392

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/46 (26%), Positives = 26/46 (56%)
 Frame = +2

Query: 17  SEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGK 154
           S  PAS+ D DT +R+I   +E  +++ ++  + +  +R   + G+
Sbjct: 15  SASPASASDSDTSVRKIGKALETYLKHSQQHVAMMEKHRAEFETGR 60


>U97194-8|AAB52447.3| 1254|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 20
            protein.
          Length = 1254

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +2

Query: 140  QKAGKELNSDQKVAVAKYDEV--AQTLEFARDLSKQVTAIESLQSVRQKNKLKRKPGFVM 313
            Q+ G      Q+  +   DE   A+ +EFA+ +S++   I++    + K K  RKP    
Sbjct: 1055 QQGGMMQQQQQQQIIKGEDETNDAKIIEFAKTISEKDKKIKAAAESKTKAKATRKPRTTK 1114

Query: 314  QQRP 325
            +  P
Sbjct: 1115 KAAP 1118


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,159,602
Number of Sequences: 27780
Number of extensions: 272167
Number of successful extensions: 780
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)