Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021109
         (828 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyce...    30   0.46 
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    29   1.1  
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c...    26   7.5  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    26   7.5  
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo...    25   9.9  

>SPAC227.02c |||rRNA processing protein Rrp15 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 205

 Score = 29.9 bits (64), Expect = 0.46
 Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
 Frame = +2

Query: 32  ANAKSEKPASSEDKDTPIRQIMTIIEHKIR--NLEKRKSKLTSYRDLQKAGKELNSDQKV 205
           A+  +++   ++++DTP+  +    +  +R  N EK+ SKL + R  ++  KE+      
Sbjct: 72  ADILNQQVTQTDEQDTPVLSLSKKSKKALRKSNAEKKDSKLRTSRRRERLRKEMVGRVTS 131

Query: 206 AVAKYDEVAQTL 241
            VA   E A+ L
Sbjct: 132 VVAVNAETAKAL 143


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = -2

Query: 773 ISTSVHVHLGSCTSSFYWNMTFFYFCDCTI 684
           I T   V L  CT + YWN+ FF FC CT+
Sbjct: 304 IETIYPVVLKMCTKTKYWNV-FFPFC-CTL 331


>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 436

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
 Frame = +2

Query: 53  PASSEDKDTPI--RQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDE 226
           P   ED   P    Q    I       +K+K+      +LQ AGK+L + Q+   A Y +
Sbjct: 134 PTDQEDPRNPQLDSQYEAFITQGESQTDKKKTSTVQEEELQNAGKKLETVQENPQA-YSK 192

Query: 227 VAQ 235
           V Q
Sbjct: 193 VTQ 195


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 19/48 (39%), Positives = 26/48 (54%)
 Frame = -2

Query: 539 TRLSFFI*FMLGVTSGYKSSKIFKSSSVNLAAPFVPFMKSVLASALPI 396
           T+ SF I  +   TS Y+ S+ FK SSV L +     +    AS+LPI
Sbjct: 438 TQSSFLI--ISTFTSSYEHSEPFKVSSVPLTSNNFSSISHSSASSLPI 483


>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
           Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 388

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +2

Query: 125 LEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDEVAQTLE 244
           LEK KS L  +R+     K+L    +  V KYD+    ++
Sbjct: 8   LEKYKSYLLQHREWDSKLKDLRFGNRDLVKKYDKTEDDIK 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,083,942
Number of Sequences: 5004
Number of extensions: 57328
Number of successful extensions: 168
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)