Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021109
(828 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58404| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 1e-10
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32) 32 0.49
SB_22971| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.5
SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23) 31 1.5
SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09) 30 2.6
SB_933| Best HMM Match : ExoD (HMM E-Value=6) 29 3.5
SB_7678| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.1
SB_51986| Best HMM Match : HLH (HMM E-Value=0.15) 29 6.1
SB_22845| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.1
SB_41836| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.5e-07) 28 8.0
>SB_58404| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 532
Score = 64.5 bits (150), Expect = 1e-10
Identities = 32/77 (41%), Positives = 47/77 (61%)
Frame = +2
Query: 20 MPSAANAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQ 199
MPSA++ S+ A + D + + ++E K+RNLEKRK KL Y+ +G+ELN+DQ
Sbjct: 1 MPSASSKPSDSQALMDSSDIA-KSGLLLVEKKVRNLEKRKLKLDGYKKQMDSGQELNADQ 59
Query: 200 KVAVAKYDEVAQTLEFA 250
K A+A D V L+ A
Sbjct: 60 KAAIANLDVVEMNLDMA 76
Score = 52.4 bits (120), Expect = 4e-07
Identities = 27/58 (46%), Positives = 36/58 (62%)
Frame = +1
Query: 334 RYAAETNKIKEVLLILDCLMQMGSADARTDFINGTNGAAKLTEDDLKILDDLYPEVTP 507
++ A+ K+ EVL L LM S D RTDF+NGTNGA +TED +D+ Y +TP
Sbjct: 109 QHNADVLKVNEVLE-LQHLMDSLSEDVRTDFLNGTNGAVVVTEDQFVQIDEFYKLITP 165
>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
Length = 2436
Score = 32.3 bits (70), Expect = 0.49
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Frame = +2
Query: 71 KDTPIRQIMTIIEHKIRNLEKRKSKLTSY-RDLQKAGKELNSDQKVAVAK 217
KD+ ++ ++ E KIR L+KR S+L S R L+ K+L D+K A+ K
Sbjct: 322 KDSGNQKATSLGEEKIRKLKKRNSELVSIARQLEDKAKKL-QDEKNAILK 370
>SB_22971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 116
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/46 (30%), Positives = 27/46 (58%)
Frame = +2
Query: 107 EHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDEVAQTLE 244
+ KIRNL+K+ ++ + QKAGK+L +Q + D + + ++
Sbjct: 65 DKKIRNLKKKLRQIEELKTQQKAGKQLEVNQLEKLKNEDALLKEIK 110
>SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)
Length = 3368
Score = 30.7 bits (66), Expect = 1.5
Identities = 13/55 (23%), Positives = 30/55 (54%)
Frame = +2
Query: 44 SEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVA 208
+E+P + + T++++ + + ++ T +RD+Q+ GKE NSD ++
Sbjct: 1928 TEQPVAPSASLQTTKAEKTLVKNTAESTKYTETSSTQHRDIQQRGKEQNSDDALS 1982
>SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)
Length = 1103
Score = 29.9 bits (64), Expect = 2.6
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +2
Query: 44 SEKPASSEDKDTPIRQIMTIIEHKIRNLEK-RKSKLTSYRDLQKAGKELNSDQKVAVAKY 220
SE A ++KD + + + + KI+ + +KSK +L KAGK + + V K
Sbjct: 861 SESEAEDDEKD--VEEKHEVKQDKIKKKKHDKKSKAKDKDNLAKAGKAIQAILDVTTRKK 918
Query: 221 DEVAQTLE 244
+ AQ+L+
Sbjct: 919 ADAAQSLQ 926
>SB_933| Best HMM Match : ExoD (HMM E-Value=6)
Length = 555
Score = 29.5 bits (63), Expect = 3.5
Identities = 20/50 (40%), Positives = 28/50 (56%)
Frame = -2
Query: 491 YKSSKIFKSSSVNLAAPFVPFMKSVLASALPICIRQSRISKTSFILLVSA 342
Y SS S++N++ PF+P+ V+ P +RQ I K FI LVSA
Sbjct: 82 YPSSMDGVDSTLNMS-PFIPY---VIRPKGPRLLRQGTIMKAGFIGLVSA 127
>SB_7678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1432
Score = 28.7 bits (61), Expect = 6.1
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +2
Query: 11 LXRMPSAANAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAG-KEL 187
L ++PS N K + KD+ IR ++T I E+++ +D Q G K+
Sbjct: 1141 LRKLPSKENMSDGKDNLEDGKDSSIRGVLTDYNISIPAQERKRKLGRPRKDEQNLGSKKK 1200
Query: 188 NSDQKVA 208
N + + A
Sbjct: 1201 NGESQTA 1207
>SB_51986| Best HMM Match : HLH (HMM E-Value=0.15)
Length = 2110
Score = 28.7 bits (61), Expect = 6.1
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +2
Query: 65 EDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAK--YDEVAQT 238
E +D PI +I ++++ N+EK K ++D ++ GK +K K D+ QT
Sbjct: 208 EIEDEPINEISSLVDFVDENIEKSLLKDPLWQDEEEKGKRKKKKKKRKRDKSLQDQTCQT 267
Query: 239 L 241
+
Sbjct: 268 M 268
>SB_22845| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1422
Score = 28.7 bits (61), Expect = 6.1
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -2
Query: 542 KTRLSFFI*FMLGVTSGYKSSKIFKSSSVNLAAPFVPFMKSVL--ASALPI 396
+++LS + F+ GVT S + S PF PF+ S+ + A+P+
Sbjct: 404 QSQLSTMVCFICGVTQPATSGRFLYSRKHTAGDPFYPFLNSITPPSGAMPL 454
>SB_41836| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.5e-07)
Length = 1128
Score = 28.3 bits (60), Expect = 8.0
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 65 EDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRD 163
ED++ IRQ+ IIE K ++E++ +L RD
Sbjct: 847 EDREDEIRQLRQIIEDKESDIEEQVMELIHLRD 879
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,651,314
Number of Sequences: 59808
Number of extensions: 403491
Number of successful extensions: 884
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2323539746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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