Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021109
         (828 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical pr...    33   0.33 
X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy ch...    33   0.33 
U41549-3|AAA83283.2|  245|Caenorhabditis elegans Hypothetical pr...    31   1.3  
Z81514-5|CAB04192.2|  611|Caenorhabditis elegans Hypothetical pr...    28   7.1  
U70850-4|AAB09125.3|  483|Caenorhabditis elegans Amino acid tran...    28   7.1  
L11247-4|AAK84520.1|  392|Caenorhabditis elegans Hypothetical pr...    28   7.1  
AF016424-2|AAB65332.1|  720|Caenorhabditis elegans Peroxisome as...    28   9.4  
AC006677-4|AAF39949.1|  327|Caenorhabditis elegans Serpentine re...    28   9.4  
AB012224-1|BAA76440.1|  720|Caenorhabditis elegans Pex6p homolog...    28   9.4  
AB010968-1|BAA33544.1|  720|Caenorhabditis elegans PEX6 protein.       28   9.4  

>Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical protein
            K12F2.1 protein.
          Length = 1969

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = +2

Query: 44   SEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYR-DLQKAGKELNSDQKVAVAKY 220
            +E   S EDK   + +I   +E ++  LE+   +    R D++KA +++  D KVA    
Sbjct: 1020 NEDLQSEEDKVNHLEKIRNKLEQQMDELEENIDREKRSRGDIEKAKRKVEGDLKVAQENI 1079

Query: 221  DEVAQ 235
            DE+ +
Sbjct: 1080 DEITK 1084


>X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy chain 3
            protein.
          Length = 1969

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = +2

Query: 44   SEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYR-DLQKAGKELNSDQKVAVAKY 220
            +E   S EDK   + +I   +E ++  LE+   +    R D++KA +++  D KVA    
Sbjct: 1020 NEDLQSEEDKVNHLEKIRNKLEQQMDELEENIDREKRSRGDIEKAKRKVEGDLKVAQENI 1079

Query: 221  DEVAQ 235
            DE+ +
Sbjct: 1080 DEITK 1084


>U41549-3|AAA83283.2|  245|Caenorhabditis elegans Hypothetical
           protein F22F1.3 protein.
          Length = 245

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/23 (65%), Positives = 16/23 (69%)
 Frame = +3

Query: 27  QLLMQNLKSRPLRRIRIHQFDKL 95
           +LL  N KSR  RRIRIH  DKL
Sbjct: 127 RLLKPNAKSRITRRIRIHVIDKL 149


>Z81514-5|CAB04192.2|  611|Caenorhabditis elegans Hypothetical
           protein F26F2.6 protein.
          Length = 611

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 9/39 (23%), Positives = 23/39 (58%)
 Frame = +3

Query: 546 LQITRAAEHLYSIIDGKPKEVLGTTYLRIKEIVSTVHEC 662
           L   +   + + +IDG+P +++ +T +++K+    V +C
Sbjct: 14  LAAQKGPSYKFGVIDGEPIDLINSTSVQVKDFDECVEKC 52


>U70850-4|AAB09125.3|  483|Caenorhabditis elegans Amino acid
           transporter protein 8 protein.
          Length = 483

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -2

Query: 599 RFSINYGVEVFCSSCYLK-VKTRLSFFI*FMLGVTSGYKSSKIFKSSSVNLAA 444
           +F+    +   CS  +   +   + FF     G TS Y+SS+I K S  N  A
Sbjct: 155 KFAARVQIISMCSKIFATLIIIGIGFFFIIFRGATSHYRSSEIMKGSDWNAGA 207


>L11247-4|AAK84520.1|  392|Caenorhabditis elegans Hypothetical
           protein F09G8.3 protein.
          Length = 392

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/52 (25%), Positives = 28/52 (53%)
 Frame = +2

Query: 26  SAANAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGK 181
           S+    S  PAS+ D DT +R+I   +E  +++ ++  + +  +R   + G+
Sbjct: 9   SSRAMSSASPASASDSDTSVRKIGKALETYLKHSQQHVAMMEKHRAEFETGR 60


>AF016424-2|AAB65332.1|  720|Caenorhabditis elegans Peroxisome
           assembly factor protein6 protein.
          Length = 720

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
 Frame = -2

Query: 485 SSKIFKSSSVNLAAPFVPFM-KSVLASALPICI--------RQSRISKTSFILLVSAA*R 333
           S+ ++++S+V+ + PF  F+ K+ L S++   +         Q  ISK + +LLV+ A  
Sbjct: 209 STAVYETSAVSQSLPFSNFLLKNSLTSSMRTTVFRMTQIYSAQKTISKKALVLLVTGASG 268

Query: 332 TQASFLACFFASRSEEIAIAVTCFERLLQ 246
           +    ++  FAS +      V  +E + +
Sbjct: 269 SGKRLMSRVFASETHRNFFEVDGYEMVCE 297


>AC006677-4|AAF39949.1|  327|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 58 protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -2

Query: 767 TSVHVHLGSCTSSFYWNMTFFYFC-DCTIYSFI 672
           TSV++H+ +     YWN+ F +FC    +YS I
Sbjct: 132 TSVYLHMNN---DKYWNLIFIFFCLGSILYSCI 161


>AB012224-1|BAA76440.1|  720|Caenorhabditis elegans Pex6p homolog
           protein.
          Length = 720

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
 Frame = -2

Query: 485 SSKIFKSSSVNLAAPFVPFM-KSVLASALPICI--------RQSRISKTSFILLVSAA*R 333
           S+ ++++S+V+ + PF  F+ K+ L S++   +         Q  ISK + +LLV+ A  
Sbjct: 209 STAVYETSAVSQSLPFSNFLLKNSLTSSMRTTVFRMTQIYSAQKTISKKALVLLVTGASG 268

Query: 332 TQASFLACFFASRSEEIAIAVTCFERLLQ 246
           +    ++  FAS +      V  +E + +
Sbjct: 269 SGKRLMSRVFASETHRNFFEVDGYEMVCE 297


>AB010968-1|BAA33544.1|  720|Caenorhabditis elegans PEX6 protein.
          Length = 720

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
 Frame = -2

Query: 485 SSKIFKSSSVNLAAPFVPFM-KSVLASALPICI--------RQSRISKTSFILLVSAA*R 333
           S+ ++++S+V+ + PF  F+ K+ L S++   +         Q  ISK + +LLV+ A  
Sbjct: 209 STAVYETSAVSQSLPFSNFLLKNSLTSSMRTTVFRMTQIYSAQKTISKKALVLLVTGASG 268

Query: 332 TQASFLACFFASRSEEIAIAVTCFERLLQ 246
           +    ++  FAS +      V  +E + +
Sbjct: 269 SGKRLMSRVFASETHRNFFEVDGYEMVCE 297


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,100,549
Number of Sequences: 27780
Number of extensions: 323701
Number of successful extensions: 883
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)