Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021108
(851 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch... 124 1e-29
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 28 1.9
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.6
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 27 4.5
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p... 26 5.9
SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3 |Schizosacc... 26 5.9
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 26 5.9
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 26 7.8
SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase |... 26 7.8
>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 382
Score = 124 bits (300), Expect = 1e-29
Identities = 52/80 (65%), Positives = 70/80 (87%)
Frame = +2
Query: 254 VLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHEN 433
V++ GEIT+++ +DYQKV+R T+K IGYDDS KGFDYKTC+V++A++QQSP+IA G+H
Sbjct: 52 VMVFGEITTRSQIDYQKVIRNTIKSIGYDDSEKGFDYKTCNVLVAIEQQSPDIAQGLHYE 111
Query: 434 RNDEEVGAGDQGLMFGYATD 493
+ EE+GAGDQG+MFGYATD
Sbjct: 112 KALEELGAGDQGIMFGYATD 131
Score = 105 bits (252), Expect = 8e-24
Identities = 48/87 (55%), Positives = 63/87 (72%)
Frame = +1
Query: 508 LPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGATVPQRVHTVVVSLQH 687
LPLT++LAHKLN ++ RR+G W RPD+KTQVT EY GA +P+RV T+VVS QH
Sbjct: 137 LPLTILLAHKLNAAMSVARRDGSLPWLRPDTKTQVTIEYEEENGAVIPRRVDTIVVSAQH 196
Query: 688 SEKITLETLRDEIREKVIKEVIPAQIL 768
++ I+ E LR EI EK+IK +PA +L
Sbjct: 197 ADSISTEDLRSEILEKIIKPTVPAHLL 223
Score = 85.8 bits (203), Expect = 7e-18
Identities = 39/47 (82%), Positives = 42/47 (89%)
Frame = +3
Query: 114 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGM 254
FLFTSESVGEGHPDK+CDQISDAILDA L DP +KVACET +KTGM
Sbjct: 5 FLFTSESVGEGHPDKICDQISDAILDACLKDDPFSKVACETASKTGM 51
Score = 52.8 bits (121), Expect = 6e-08
Identities = 22/33 (66%), Positives = 25/33 (75%)
Frame = +3
Query: 753 PCTNLDERTVIHINPCGLFIIGGPQSDAGLTGR 851
P LDE+TV HI P G F++GGPQ DAGLTGR
Sbjct: 219 PAHLLDEKTVYHIQPSGRFVVGGPQGDAGLTGR 251
>SPAC110.02 |pds5||cohesin-associated protein
Pds5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1205
Score = 27.9 bits (59), Expect = 1.9
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = -3
Query: 666 SMNSLWDCCTTSKYIFASNLCF*IWSCPPK--FSISPELCNFL 544
S +SL D TT ++IF+ NL +W P +I P+ N L
Sbjct: 244 SRDSLSDSMTTPEFIFSHNLVLQLWKYAPTTLLNIIPQFENEL 286
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.5 bits (58), Expect = 2.6
Identities = 34/119 (28%), Positives = 48/119 (40%)
Frame = -3
Query: 660 NSLWDCCTTSKYIFASNLCF*IWSCPPKFSISPELCNFLIEFVCKHYSQRQHSSVSSVA* 481
+SL D + S I S+ + S S L + + S Q SVSS +
Sbjct: 136 SSLLDPSSVSSAILPSSTSVEVSISSSSLSSSDPLTSSTFSSLSSSTSSSQ-PSVSSTSS 194
Query: 480 PNIKPWSPAPTSSSFLFSCTPAAMFGDCWSSASITLHVL*SKPLDESS*PICLTVSRTT 304
+P TSSS+L S + + SS+S TL S L SS P + S +T
Sbjct: 195 STFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLT---SSSLSTSSIPSTSSSSSST 250
Score = 25.8 bits (54), Expect = 7.8
Identities = 29/118 (24%), Positives = 48/118 (40%)
Frame = -1
Query: 821 SSNYKESTWINVNYSSLIKICAGITSLMTFSLISSRKVSRVIFSECCSDTTTV*TLCGTV 642
SS+ ST + + SS + TS + SS S FS S + + + TV
Sbjct: 313 SSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTV 372
Query: 641 APPANTYSQVTCVFESGLAHQNSPFRLSSAIF*LSLCASTTVNGSILLSHLLHNRTSS 468
+ ++T S S + S SS++ +S+ + + + S HN TSS
Sbjct: 373 SSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKSSSAPVSSAFYHNSTSS 430
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 26.6 bits (56), Expect = 4.5
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Frame = -1
Query: 779 SSLIKICAGITSLMT-------FSLISSRKVSRVIFSECCSDTTTV*TLCGTVAPPANTY 621
SSLI +C+ +TS ++ S ++S+++S SE TTT T G+V
Sbjct: 605 SSLITVCSNVTSEISSTSLASLISTLTSQQISSNKSSEFVGQTTTEYTTSGSVGFTTTLA 664
Query: 620 SQVTCVFESGLAHQNSPFRLSSAIF*LSLCASTTV 516
+Q V + L +P ++ + S+ +TT+
Sbjct: 665 TQSGSVPGTVLVDVPTPSWITETVTSGSVGFTTTI 699
>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 749
Score = 26.2 bits (55), Expect = 5.9
Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Frame = +3
Query: 18 WANSKFRMPETSKMNGYAKTNGH-SYDMEDGSVFLFTSESVGEGHPDKMCDQISDAIL 188
W + K M S T S+D E S+F S+SV E CD+ SD L
Sbjct: 633 WPDEKKAMESHSTRAHRRSTESKISFDSEADSLFEEASKSVPEDPVSVFCDEESDESL 690
>SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 425
Score = 26.2 bits (55), Expect = 5.9
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -2
Query: 286 SFGCDFATQKHIPVLV 239
SF DFATQK +PV+V
Sbjct: 261 SFQTDFATQKSLPVVV 276
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 26.2 bits (55), Expect = 5.9
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 150 PDKMCDQISDAILDA-HLNQDPDAKVACETITKTGM 254
P K ++ D ++ + H N DPDAK+A ++K M
Sbjct: 180 PPKEIEKTVDHVIQSEHCNIDPDAKMAVLRLSKGDM 215
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 25.8 bits (54), Expect = 7.8
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = -2
Query: 385 EHHTACLVIKAFGRIIITNMFDRFAHNFLIIHVSFGCDFATQ 260
EH+ C+ + G ++++ DR + I +S C F T+
Sbjct: 101 EHNIPCITFNSSGTLLLSGSIDRSLQIWDITSLSCLCKFYTK 142
>SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 266
Score = 25.8 bits (54), Expect = 7.8
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 281 KANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQ 400
+ N DY K+ E VK G D+ K C ++ L Q+
Sbjct: 106 EVNEDYAKIAYELVKLAGLDEIVTIMIGKACDSLVELQQK 145
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,790,680
Number of Sequences: 5004
Number of extensions: 83226
Number of successful extensions: 250
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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