Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021108
(851 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0264 + 2030080-2031270 100 2e-21
01_02_0051 - 10655867-10657057 99 5e-21
01_03_0090 - 12347165-12348349 95 5e-20
06_03_1318 - 29282562-29282566,29282727-29282810,29282913-292833... 31 1.2
02_01_0375 + 2712289-2712957 29 4.7
>05_01_0264 + 2030080-2031270
Length = 396
Score = 100 bits (239), Expect = 2e-21
Identities = 46/82 (56%), Positives = 63/82 (76%), Gaps = 2/82 (2%)
Frame = +2
Query: 254 VLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHEN 433
V++ GEIT+KANVDY+K+VRET ++IG+ + G D C V++ ++QQSP+IA GVH +
Sbjct: 54 VMVFGEITTKANVDYEKIVRETCRNIGFVSADVGLDADHCKVLVNIEQQSPDIAQGVHGH 113
Query: 434 --RNDEEVGAGDQGLMFGYATD 493
+ EE+GAGDQG MFGYATD
Sbjct: 114 FTKRPEEIGAGDQGHMFGYATD 135
Score = 95.9 bits (228), Expect = 4e-20
Identities = 47/96 (48%), Positives = 63/96 (65%)
Frame = +1
Query: 505 MLPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGATVPQRVHTVVVSLQ 684
++PL+ VLA KL ++ E+R+NG W RPD KTQVT EY GA VP RVHTV++S Q
Sbjct: 140 LMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYRNESGARVPVRVHTVLISTQ 199
Query: 685 HSEKITLETLRDEIREKVIKEVIPAQILMREL*FTL 792
H E +T + + +++E VIK VIP Q L + F L
Sbjct: 200 HDETVTNDEIAADLKEHVIKPVIPEQYLDEKTIFHL 235
Score = 85.8 bits (203), Expect = 4e-17
Identities = 37/47 (78%), Positives = 42/47 (89%)
Frame = +3
Query: 114 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGM 254
FLFTSESV EGHPDK+CDQ+SDA+LDA L +DPD+KVACET TKT M
Sbjct: 7 FLFTSESVNEGHPDKLCDQVSDAVLDACLAEDPDSKVACETCTKTNM 53
Score = 52.0 bits (119), Expect = 6e-07
Identities = 20/29 (68%), Positives = 24/29 (82%)
Frame = +3
Query: 765 LDERTVIHINPCGLFIIGGPQSDAGLTGR 851
LDE+T+ H+NP G F+IGGP DAGLTGR
Sbjct: 227 LDEKTIFHLNPSGRFVIGGPHGDAGLTGR 255
>01_02_0051 - 10655867-10657057
Length = 396
Score = 98.7 bits (235), Expect = 5e-21
Identities = 45/82 (54%), Positives = 63/82 (76%), Gaps = 2/82 (2%)
Frame = +2
Query: 254 VLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHEN 433
V++ GEIT+KANVDY+K+VR+T + IG+ + G D + C V++ ++QQSP+IA GVH +
Sbjct: 54 VMVFGEITTKANVDYEKIVRDTCRGIGFVSNDVGLDAEHCKVLVNIEQQSPDIAQGVHGH 113
Query: 434 --RNDEEVGAGDQGLMFGYATD 493
+ EE+GAGDQG MFGYATD
Sbjct: 114 FTKRPEEIGAGDQGHMFGYATD 135
Score = 95.9 bits (228), Expect = 4e-20
Identities = 47/96 (48%), Positives = 63/96 (65%)
Frame = +1
Query: 505 MLPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGATVPQRVHTVVVSLQ 684
++PL+ VLA KL ++ E+R+NG W RPD KTQVT EY GA VP RVHTV++S Q
Sbjct: 140 LMPLSHVLATKLGARLTEVRKNGACAWLRPDGKTQVTVEYQNDNGAMVPLRVHTVLISTQ 199
Query: 685 HSEKITLETLRDEIREKVIKEVIPAQILMREL*FTL 792
H E +T + + +++E VIK VIP Q L + F L
Sbjct: 200 HDETVTNDEIAADLKEHVIKPVIPEQYLDEKTIFHL 235
Score = 85.8 bits (203), Expect = 4e-17
Identities = 38/53 (71%), Positives = 44/53 (83%)
Frame = +3
Query: 96 MEDGSVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGM 254
M + FLFTSESV EGHPDK+CDQISDA+LDA L +DP++KVACET TKT M
Sbjct: 1 MAEVDTFLFTSESVNEGHPDKLCDQISDAVLDACLAEDPESKVACETCTKTNM 53
Score = 52.0 bits (119), Expect = 6e-07
Identities = 20/29 (68%), Positives = 24/29 (82%)
Frame = +3
Query: 765 LDERTVIHINPCGLFIIGGPQSDAGLTGR 851
LDE+T+ H+NP G F+IGGP DAGLTGR
Sbjct: 227 LDEKTIFHLNPSGRFVIGGPHGDAGLTGR 255
>01_03_0090 - 12347165-12348349
Length = 394
Score = 95.5 bits (227), Expect = 5e-20
Identities = 44/82 (53%), Positives = 60/82 (73%), Gaps = 2/82 (2%)
Frame = +2
Query: 254 VLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHEN 433
V++ GEIT+KA VDY+K+VR+T + IG+ G D C V++ ++QQSP+IA GVH +
Sbjct: 53 VMVFGEITTKATVDYEKIVRDTCRGIGFVSDDVGLDADRCKVLVNIEQQSPDIAQGVHGH 112
Query: 434 --RNDEEVGAGDQGLMFGYATD 493
+ EE+GAGDQG MFGYATD
Sbjct: 113 FTKRPEEIGAGDQGHMFGYATD 134
Score = 95.1 bits (226), Expect = 6e-20
Identities = 46/96 (47%), Positives = 64/96 (66%)
Frame = +1
Query: 505 MLPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGATVPQRVHTVVVSLQ 684
++PL+ VLA KL ++ E+R+NG W RPD KTQVT EY+ GA VP RVHTV++S Q
Sbjct: 139 LMPLSHVLATKLGARLTEVRKNGTCAWLRPDGKTQVTVEYLNDAGAMVPVRVHTVLISTQ 198
Query: 685 HSEKITLETLRDEIREKVIKEVIPAQILMREL*FTL 792
H E +T + + +++E VIK VIP + L + F L
Sbjct: 199 HDETVTNDEIAADLKEHVIKPVIPDKYLDEKTIFHL 234
Score = 88.2 bits (209), Expect = 7e-18
Identities = 41/65 (63%), Positives = 48/65 (73%)
Frame = +3
Query: 114 FLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGMCFCVAKSHPKLTW 293
FLFTSESV EGHPDK+CDQ+SDA+LDA L QDPD+KVACET TKT M + K T
Sbjct: 6 FLFTSESVNEGHPDKLCDQVSDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKATV 65
Query: 294 IIKKL 308
+K+
Sbjct: 66 DYEKI 70
Score = 52.4 bits (120), Expect = 4e-07
Identities = 21/33 (63%), Positives = 25/33 (75%)
Frame = +3
Query: 753 PCTNLDERTVIHINPCGLFIIGGPQSDAGLTGR 851
P LDE+T+ H+NP G F+IGGP DAGLTGR
Sbjct: 222 PDKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGR 254
>06_03_1318 - 29282562-29282566,29282727-29282810,29282913-29283380,
29283735-29283917,29284362-29284467,29284627-29284651,
29284736-29284855,29284920-29284997,29285646-29285774,
29285976-29285989,29286168-29287944,29288344-29288489,
29288921-29291029
Length = 1747
Score = 31.1 bits (67), Expect = 1.2
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = -1
Query: 530 ASTTVNGSILLSHLLHNRTSSPGLLPQLPRHFCSHAPQ 417
+S+ +NG L +L +SS G L QLPR+F S P+
Sbjct: 1675 SSSELNGQPLDDSILDIESSSFGFLSQLPRNFFSDLPE 1712
>02_01_0375 + 2712289-2712957
Length = 222
Score = 29.1 bits (62), Expect = 4.7
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 520 VVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYV 627
VV +L++ + +++G WW RPDS EY+
Sbjct: 164 VVYWGRLSKALVWWKQSGNNWWPRPDSDLGEDFEYI 199
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,910,536
Number of Sequences: 37544
Number of extensions: 555033
Number of successful extensions: 1450
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1447
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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