Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021108
(851 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47946| Best HMM Match : No HMM Matches (HMM E-Value=.) 140 1e-33
SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.) 131 6e-31
SB_11655| Best HMM Match : No HMM Matches (HMM E-Value=.) 123 2e-28
SB_46129| Best HMM Match : No HMM Matches (HMM E-Value=.) 97 2e-20
SB_53305| Best HMM Match : S-AdoMet_synt_N (HMM E-Value=0.0056) 85 9e-17
SB_16847| Best HMM Match : S-AdoMet_synt_M (HMM E-Value=0) 71 9e-13
SB_31747| Best HMM Match : Myotub-related (HMM E-Value=0) 33 0.39
SB_15158| Best HMM Match : Cadherin (HMM E-Value=7.5e-23) 31 0.90
SB_17763| Best HMM Match : IBN_N (HMM E-Value=3.4e-20) 31 1.2
SB_54173| Best HMM Match : UPAR_LY6 (HMM E-Value=2) 29 3.6
SB_18815| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_2549| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.3
SB_14617| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_47946| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 460
Score = 140 bits (340), Expect = 1e-33
Identities = 61/80 (76%), Positives = 74/80 (92%)
Frame = +2
Query: 254 VLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHEN 433
+++CGEITS ANVDYQKVVR+T+K IGYDDSSKGFDYKTC+V+ A++QQSP+IA GVH
Sbjct: 9 IVVCGEITSLANVDYQKVVRDTIKQIGYDDSSKGFDYKTCTVLQAIEQQSPDIAQGVHIG 68
Query: 434 RNDEEVGAGDQGLMFGYATD 493
R+DE++GAGDQGLMFGYATD
Sbjct: 69 RSDEDLGAGDQGLMFGYATD 88
Score = 113 bits (273), Expect = 1e-25
Identities = 49/88 (55%), Positives = 66/88 (75%)
Frame = +1
Query: 505 MLPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGATVPQRVHTVVVSLQ 684
++PLTVVLAH LN+++A+ RRNG W RPDSKTQVT EY F GG VP RVHT+V+S+Q
Sbjct: 93 LMPLTVVLAHGLNKRLADCRRNGSLPWVRPDSKTQVTVEYKFQGGKAVPLRVHTIVISVQ 152
Query: 685 HSEKITLETLRDEIREKVIKEVIPAQIL 768
H I L+ +R E+ + V+KEV+P + +
Sbjct: 153 HDPNIELDVMRKELMDYVVKEVVPEKYI 180
Score = 46.8 bits (106), Expect = 2e-05
Identities = 19/29 (65%), Positives = 22/29 (75%)
Frame = +3
Query: 765 LDERTVIHINPCGLFIIGGPQSDAGLTGR 851
+D TV H+ P G F+IGGPQ DAGLTGR
Sbjct: 180 IDNDTVYHMQPSGSFVIGGPQGDAGLTGR 208
>SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 407
Score = 131 bits (317), Expect = 6e-31
Identities = 59/80 (73%), Positives = 69/80 (86%)
Frame = +2
Query: 254 VLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHEN 433
+LLCGEITS A VDYQ VVR+ +K IGYDDS KGFDYKTC+V++AL+QQS +IA GVH
Sbjct: 78 ILLCGEITSNAVVDYQSVVRQCIKDIGYDDSEKGFDYKTCNVLVALEQQSVDIAHGVHVG 137
Query: 434 RNDEEVGAGDQGLMFGYATD 493
R +E+VGAGDQGLMFGYATD
Sbjct: 138 REEEDVGAGDQGLMFGYATD 157
Score = 122 bits (295), Expect = 3e-28
Identities = 55/96 (57%), Positives = 72/96 (75%)
Frame = +1
Query: 505 MLPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGATVPQRVHTVVVSLQ 684
++PLTVVLAHK+NQK+AE RR+G WARPDSKTQVT EY F G +P RVHT+V+S+Q
Sbjct: 162 LMPLTVVLAHKMNQKLAEYRRDGTLPWARPDSKTQVTVEYKFEHGRAIPLRVHTIVISVQ 221
Query: 685 HSEKITLETLRDEIREKVIKEVIPAQILMREL*FTL 792
H IT+E LR E+ EK++K V+P++ L + F L
Sbjct: 222 HDPTITMENLRKELMEKIVKTVVPSKFLDEDTIFHL 257
Score = 98.3 bits (234), Expect = 7e-21
Identities = 43/49 (87%), Positives = 46/49 (93%)
Frame = +3
Query: 108 SVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGM 254
+ FLFTSESVGEGHPDKMCDQISDAILDAHL QDP+AKVACET+ KTGM
Sbjct: 29 NTFLFTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVACETVAKTGM 77
Score = 53.2 bits (122), Expect = 3e-07
Identities = 22/33 (66%), Positives = 25/33 (75%)
Frame = +3
Query: 753 PCTNLDERTVIHINPCGLFIIGGPQSDAGLTGR 851
P LDE T+ H+ P GLF+IGGPQ DAGLTGR
Sbjct: 245 PSKFLDEDTIFHLQPSGLFVIGGPQGDAGLTGR 277
>SB_11655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 428
Score = 123 bits (297), Expect = 2e-28
Identities = 57/80 (71%), Positives = 65/80 (81%)
Frame = +2
Query: 254 VLLCGEITSKANVDYQKVVRETVKHIGYDDSSKGFDYKTCSVMLALDQQSPNIAAGVHEN 433
VLL GEITS A VDYQ VVR T++ IGY+DSS GFDYKTCSV+LA+ +Q IA VH N
Sbjct: 99 VLLFGEITSNARVDYQAVVRNTIRDIGYNDSSTGFDYKTCSVLLAIQEQVAEIAQTVHLN 158
Query: 434 RNDEEVGAGDQGLMFGYATD 493
R D+E+GAGDQGLMFGYATD
Sbjct: 159 RRDDEIGAGDQGLMFGYATD 178
Score = 91.9 bits (218), Expect = 6e-19
Identities = 42/55 (76%), Positives = 44/55 (80%)
Frame = +3
Query: 90 YDMEDGSVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGM 254
Y D FLFTSESV EGH DKMCDQISDA+LDAHL QDP AKVACET TKTG+
Sbjct: 44 YSTSDCDNFLFTSESVNEGHSDKMCDQISDAVLDAHLEQDPYAKVACETATKTGL 98
Score = 90.6 bits (215), Expect = 1e-18
Identities = 42/97 (43%), Positives = 62/97 (63%)
Frame = +1
Query: 505 MLPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGATVPQRVHTVVVSLQ 684
++PLT VLAHKL ++AE R+ W PD KTQVT +Y GA +P+RVHTV++S Q
Sbjct: 183 LMPLTTVLAHKLCARLAECRKGKILPWLLPDGKTQVTVDYRLERGACIPERVHTVLISTQ 242
Query: 685 HSEKITLETLRDEIREKVIKEVIPAQILMREL*FTLI 795
H+ + +E +R ++E +I VIP + L + F L+
Sbjct: 243 HTPDVGIEEIRHHLKETIINHVIPEKYLDDKTIFHLL 279
Score = 44.0 bits (99), Expect = 2e-04
Identities = 18/29 (62%), Positives = 22/29 (75%)
Frame = +3
Query: 765 LDERTVIHINPCGLFIIGGPQSDAGLTGR 851
LD++T+ H+ P G FI GGP DAGLTGR
Sbjct: 270 LDDKTIFHLLPSGQFIDGGPLGDAGLTGR 298
>SB_46129| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 91
Score = 96.7 bits (230), Expect = 2e-20
Identities = 42/49 (85%), Positives = 46/49 (93%)
Frame = +3
Query: 108 SVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVACETITKTGM 254
+ FLFTSESVGEGHPDKMCDQISDAILDAHL QDP+AKVACE++ KTGM
Sbjct: 9 NTFLFTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVACESVAKTGM 57
Score = 61.7 bits (143), Expect = 7e-10
Identities = 26/33 (78%), Positives = 31/33 (93%)
Frame = +2
Query: 254 VLLCGEITSKANVDYQKVVRETVKHIGYDDSSK 352
+++CGEITS ANVDYQKVVR+T+K IGYDDSSK
Sbjct: 58 IVVCGEITSLANVDYQKVVRDTIKQIGYDDSSK 90
>SB_53305| Best HMM Match : S-AdoMet_synt_N (HMM E-Value=0.0056)
Length = 70
Score = 84.6 bits (200), Expect = 9e-17
Identities = 37/41 (90%), Positives = 39/41 (95%)
Frame = +3
Query: 108 SVFLFTSESVGEGHPDKMCDQISDAILDAHLNQDPDAKVAC 230
+ FLFTSESVGEGHPDKMCDQISDAILDAHL QDP+AKVAC
Sbjct: 29 NTFLFTSESVGEGHPDKMCDQISDAILDAHLKQDPNAKVAC 69
>SB_16847| Best HMM Match : S-AdoMet_synt_M (HMM E-Value=0)
Length = 192
Score = 71.3 bits (167), Expect = 9e-13
Identities = 40/100 (40%), Positives = 61/100 (61%)
Frame = +1
Query: 505 MLPLTVVLAHKLNQKIAELRRNGEFWWARPDSKTQVTCEYVFAGGATVPQRVHTVVVSLQ 684
++P V AH+L ++ +ELRRNG W RPD+K+QVT + G + +V VV+S Q
Sbjct: 29 LMPAPVYYAHRLVERQSELRRNGTLPWLRPDAKSQVTINW--EGDS---PKVDAVVLSTQ 83
Query: 685 HSEKITLETLRDEIREKVIKEVIPAQILMREL*FTLIHVD 804
H I+L+ LR+ + E +IK V+PA+ L TL H++
Sbjct: 84 HDPSISLDDLREAVLENIIKPVLPAEWLHEG---TLYHIN 120
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/33 (63%), Positives = 23/33 (69%)
Frame = +3
Query: 753 PCTNLDERTVIHINPCGLFIIGGPQSDAGLTGR 851
P L E T+ HINP G F+IGGP DAGLTGR
Sbjct: 107 PAEWLHEGTLYHINPTGNFVIGGPVGDAGLTGR 139
Score = 34.7 bits (76), Expect = 0.096
Identities = 14/17 (82%), Positives = 16/17 (94%)
Frame = +2
Query: 443 EEVGAGDQGLMFGYATD 493
E+ GAGDQGLMFGYAT+
Sbjct: 8 EDQGAGDQGLMFGYATN 24
>SB_31747| Best HMM Match : Myotub-related (HMM E-Value=0)
Length = 550
Score = 32.7 bits (71), Expect = 0.39
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = -2
Query: 301 LIIHVSFGCDFA-TQKHIPVLVM-VSHATFASGS*FRCASRIASLIWSHILSG 149
L H++F C T + V+ +S + A + FRC+ R S++W H+ +G
Sbjct: 263 LTCHLNFACRVCRTYPRLHVIPSSISDSDLAKVASFRCSGRFPSIVWRHMTNG 315
>SB_15158| Best HMM Match : Cadherin (HMM E-Value=7.5e-23)
Length = 390
Score = 31.5 bits (68), Expect = 0.90
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = +2
Query: 266 GEITSKANVDYQKVVRETV---KHIGYDDSSKGFDYK 367
GEITS N+D +K+ + K I YD G+DY+
Sbjct: 103 GEITSNVNIDREKLPGSNLLEFKAIAYDAKGAGYDYR 139
>SB_17763| Best HMM Match : IBN_N (HMM E-Value=3.4e-20)
Length = 681
Score = 31.1 bits (67), Expect = 1.2
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -1
Query: 488 LHNRTSSPGLLPQLPRHFCSHAPQQQCLVIVGL 390
L N T+ P + PQ P H SHA + ++I G+
Sbjct: 99 LGNETARPAIAPQEPEHLVSHANKILTVIIQGM 131
>SB_54173| Best HMM Match : UPAR_LY6 (HMM E-Value=2)
Length = 141
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -1
Query: 734 FSLISSRKVSRVIFSECCSDTTTV*TLCGTVAPPANTYSQVTC 606
FSL +RK ++ + C+D T +CG YS V+C
Sbjct: 47 FSLNGTRKDGSPVYLQYCADHTKCDDICGNFNSTILNYSLVSC 89
>SB_18815| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +1
Query: 1 VWGYISGLTLNSECRRLQK*MDTRK-PTDTVMIWKMDQYFCSH 126
VW ++GL+ N E K + T++ PT+ V++W + + F +H
Sbjct: 419 VWQMMAGLSENDELVDSYKHLFTKESPTEQVIVWDIHRTFPAH 461
>SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3287
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +1
Query: 1 VWGYISGLTLNSECRRLQK*MDTRK-PTDTVMIWKMDQYFCSH 126
VW ++GL+ N E K + T++ PT+ V++W + + F +H
Sbjct: 73 VWQMMAGLSENDELVDSYKHLFTKESPTEQVIVWDIHRTFPAH 115
>SB_2549| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1155
Score = 28.7 bits (61), Expect = 6.3
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +3
Query: 39 MPETSKMNGYAKTNGHSYDMEDGSVFLFTSESVGE-GHPDKMCDQISDAILDAHLNQDPD 215
MP G +K N + D D +L +S+ + D++C + I AHL QDPD
Sbjct: 196 MPYGGGKRGKSKKNSSTLDTGDLETWLKGRKSITRVRNHDELCAARALVIGMAHLTQDPD 255
>SB_14617| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 598
Score = 28.3 bits (60), Expect = 8.4
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +3
Query: 39 MPETSKMNGYAKTNGHSYDMEDGSVFLFTSESVGE-GHPDKMCDQISDAILDAHLNQDPD 215
MP + G +K N + D D +L S+ + D++C + I AHL +DPD
Sbjct: 241 MPFGAGKRGKSKKNSSTLDTGDLETWLKGKRSITRVRNHDELCAARATVIGMAHLTKDPD 300
>SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1506
Score = 28.3 bits (60), Expect = 8.4
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +3
Query: 165 DQISDAILDAHLNQDPDAKVACETITKTGMCFCVAKSHPKLTWIIKKL 308
D+ +D +DA + DP + A T T T CVA+ + W+++ +
Sbjct: 1410 DKQTDCPMDAPDSSDPTSTAAPSTTTVTSTAVCVAR-YTNGMWVLQDI 1456
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,126,391
Number of Sequences: 59808
Number of extensions: 667040
Number of successful extensions: 1800
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1798
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2419355818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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