Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021106X
         (349 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po...    27   0.63 
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc...    26   1.9  
SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ...    26   1.9  
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|...    25   4.4  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    25   4.4  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    24   7.8  
SPCC18.06c |caf1|pop2|CCR4-Not complex subunit Caf1|Schizosaccha...    24   7.8  

>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 27.5 bits (58), Expect = 0.63
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
 Frame = +1

Query: 28  VRDWQQTEHLGTNTPTFQPYKIKVTAVNFKGTSNVTP---IEVIGW 156
           ++ WQ   HL    P F+ +K    AV +    +++    IE +GW
Sbjct: 189 IKHWQDVRHLAFKIPNFERWKPGDVAVLYPWNDDMSVNSFIECMGW 234


>SPAC31A2.14 |||WD repeat protein, human WRDR48
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 334 KDLLTRSSSASVQVWILYPLKCPLSDSAPRES 239
           + +LT SS A++++W L   KC  S  A  +S
Sbjct: 229 RTILTASSDATIKLWSLRAQKCLFSFIAHSDS 260


>SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III
           subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 21/67 (31%), Positives = 30/67 (44%)
 Frame = +2

Query: 149 SAGPDRADPLKLRATSACRRWHPAPAPCSAGLPWRRVAEGALQRIQNPDLDRRRGGPGQE 328
           +A  D  DP +L   S          P   G    R A+  + R+ NPD+   +  PGQE
Sbjct: 152 NAATDEKDPKRLYVNSEVYSGDLIWKP--QGRQEERFADNPI-RVVNPDIVVAKLRPGQE 208

Query: 329 IFVESDA 349
           I +E+ A
Sbjct: 209 IDLEAHA 215


>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 191 TSACRRWHPAPAPCSAGLPWRRVAEGALQRIQ 286
           +SAC  W P  AP +   P     + AL  +Q
Sbjct: 195 SSACMSWFPLNAPLAFATPVFSAIDNALPAMQ 226


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +1

Query: 172 PTQAPGNLSLSQVASGTSAVLSW--TPVAPS 258
           PT AP     S+V SGT  +LS   TP +P+
Sbjct: 374 PTLAPNPTGPSRVTSGTEDLLSLDATPFSPT 404


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +3

Query: 189 QPQPVAGGIRHQRRAQLDSRGAESLR 266
           Q Q      RH+  A LD +G  SLR
Sbjct: 445 QNQKAVRSARHRHYASLDEQGLHSLR 470


>SPCC18.06c |caf1|pop2|CCR4-Not complex subunit
           Caf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 212 HPAPAPCSAGLP 247
           HP+P P +AG+P
Sbjct: 297 HPSPTPSNAGIP 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,487,543
Number of Sequences: 5004
Number of extensions: 27857
Number of successful extensions: 65
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)