Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021106X
(349 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29852| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.007
SB_54208| Best HMM Match : fn3 (HMM E-Value=0) 33 0.048
SB_57031| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.048
SB_1850| Best HMM Match : fn3 (HMM E-Value=7.5e-22) 29 0.78
SB_38403| Best HMM Match : PP2C (HMM E-Value=8.5e-35) 29 1.0
SB_56407| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.0
SB_57926| Best HMM Match : I-set (HMM E-Value=3.5e-39) 29 1.4
SB_26361| Best HMM Match : fn3 (HMM E-Value=0) 28 1.8
SB_5079| Best HMM Match : fn3 (HMM E-Value=1.3e-35) 28 1.8
SB_27459| Best HMM Match : fn3 (HMM E-Value=1.4e-23) 27 4.2
SB_4468| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.2
SB_12326| Best HMM Match : fn3 (HMM E-Value=0.0006) 27 4.2
SB_15000| Best HMM Match : CRA_rpt (HMM E-Value=4) 27 5.5
SB_13204| Best HMM Match : GRP (HMM E-Value=0.0017) 27 5.5
SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0) 27 5.5
SB_33342| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.5
SB_39230| Best HMM Match : SNF2_N (HMM E-Value=1.40004e-41) 26 7.3
SB_56303| Best HMM Match : Phage_Mu_Gam (HMM E-Value=4.9) 26 9.7
SB_55420| Best HMM Match : fn3 (HMM E-Value=0) 26 9.7
SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0) 26 9.7
SB_3077| Best HMM Match : fn3 (HMM E-Value=8e-28) 26 9.7
>SB_29852| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 836
Score = 36.3 bits (80), Expect = 0.007
Identities = 22/65 (33%), Positives = 34/65 (52%)
Frame = +1
Query: 67 TPTFQPYKIKVTAVNFKGTSNVTPIEVIGWSG*GRPTQAPGNLSLSQVASGTSAVLSWTP 246
T + Y +V A N +G + I + G+SG P P NL + ++ S TSA+ +WT
Sbjct: 699 TDYYVKYAFQVQAANDRGFGPKSGI-MFGFSGERYPVGRPTNLKI-EITSPTSALATWTS 756
Query: 247 VAPSR 261
+ SR
Sbjct: 757 IVDSR 761
>SB_54208| Best HMM Match : fn3 (HMM E-Value=0)
Length = 1292
Score = 33.5 bits (73), Expect = 0.048
Identities = 23/77 (29%), Positives = 37/77 (48%)
Frame = +1
Query: 19 EHQVRDWQQTEHLGTNTPTFQPYKIKVTAVNFKGTSNVTPIEVIGWSG*GRPTQAPGNLS 198
E+ R T+ T + Y+I+V A KG N T + ++ +G P QAP N++
Sbjct: 752 EYVTRITAATDIKLTGLQMAEQYEIRVAAGTVKGYGNET-VHMVH-TGEDVPGQAPSNIT 809
Query: 199 LSQVASGTSAVLSWTPV 249
+ T+ +SW PV
Sbjct: 810 AQNRTTLTTIPVSWVPV 826
>SB_57031| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1495
Score = 33.5 bits (73), Expect = 0.048
Identities = 22/80 (27%), Positives = 36/80 (45%)
Frame = +1
Query: 31 RDWQQTEHLGTNTPTFQPYKIKVTAVNFKGTSNVTPIEVIGWSG*GRPTQAPGNLSLSQV 210
R W+ ++LG F YK+ + KG + E+I + P+ APGN+ +
Sbjct: 789 RSWKVVQNLGK----FTEYKVTICGFTIKGCGAESN-ELILRTFEDVPSVAPGNVGTLNL 843
Query: 211 ASGTSAVLSWTPVAPSR*GG 270
S T +SW+ + P G
Sbjct: 844 TSMTDLRVSWSAIPPQHANG 863
>SB_1850| Best HMM Match : fn3 (HMM E-Value=7.5e-22)
Length = 461
Score = 29.5 bits (63), Expect = 0.78
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +1
Query: 97 VTAVNFKGTSNVT-PIEVIGWSG*GRPTQAPGNLSLSQVASGTSAVLSWTPV 249
+T F N + V+ W+ P+ P N++++ V S T+ L W PV
Sbjct: 268 ITVAGFTAAGNGSWSAPVVCWTAEAAPSSYPSNITITNVTS-TTLSLQWGPV 318
>SB_38403| Best HMM Match : PP2C (HMM E-Value=8.5e-35)
Length = 916
Score = 29.1 bits (62), Expect = 1.0
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -1
Query: 226 RWCRMPPATG*GCPELEWV-GPIRTSRSLQWESR 128
RW R P ATG G E+ W+ GP+ T RS +E R
Sbjct: 472 RWLRGPVATGSGGYEVRWLRGPVAT-RSGGYEVR 504
Score = 28.3 bits (60), Expect = 1.8
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -1
Query: 226 RWCRMPPATG*GCPELEWV-GPIRT 155
RW R P ATG G E+ W+ GP+ T
Sbjct: 520 RWLRGPVATGSGGYEVRWLRGPVAT 544
Score = 28.3 bits (60), Expect = 1.8
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -1
Query: 226 RWCRMPPATG*GCPELEWV-GPIRT 155
RW R P ATG G E+ W+ GP+ T
Sbjct: 648 RWLRDPVATGSGGYEVRWLRGPVAT 672
Score = 25.8 bits (54), Expect = 9.7
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -1
Query: 226 RWCRMPPATG*GCPELEWV-GPIRT 155
RW R P ATG G + W+ GP+ T
Sbjct: 664 RWLRGPVATGSGGYGIRWLRGPVAT 688
>SB_56407| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2028
Score = 29.1 bits (62), Expect = 1.0
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +1
Query: 85 YKIKVTAVNFKGTSNVTPIEVIGWSG*GRPTQAPGNLSLSQVASGTSAVLSWTPVAPSR 261
Y + ++A GT + ++ SG P AP N++ + S TS + W P+ PSR
Sbjct: 1403 YTVSLSAFTRVGTGPWSQRYLVT-SGEQEPQDAPANITAT-AESSTSIRVRWDPIDPSR 1459
>SB_57926| Best HMM Match : I-set (HMM E-Value=3.5e-39)
Length = 788
Score = 28.7 bits (61), Expect = 1.4
Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Frame = +1
Query: 61 TNTPTFQPYKIKVTAVNFKGT---SNVTP-IEVIGWSG*GRPTQAPGNLSLSQVASGTSA 228
T+ F YK +V AVN GT S+ TP I G PT G S +Q +
Sbjct: 650 TDLSPFTRYKFRVRAVNEVGTGLPSDATPFITTFSAPPSGAPTSVKGQPSAAQ-----AF 704
Query: 229 VLSWTP 246
V+SW P
Sbjct: 705 VVSWQP 710
>SB_26361| Best HMM Match : fn3 (HMM E-Value=0)
Length = 1898
Score = 28.3 bits (60), Expect = 1.8
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +1
Query: 91 IKVTAVNFKGTSNVTPIEVIGWSG*GRPTQAPGNLSLSQVASGTSAVLSWTPV 249
IK +N KGTSNVT + V + P Q P ++ +Q T + W P+
Sbjct: 703 IKAYNLNGKGTSNVTKL-VYFVTDQDAPDQPPSSVR-AQAQGSTQILAEWGPI 753
>SB_5079| Best HMM Match : fn3 (HMM E-Value=1.3e-35)
Length = 978
Score = 28.3 bits (60), Expect = 1.8
Identities = 15/63 (23%), Positives = 29/63 (46%)
Frame = +1
Query: 61 TNTPTFQPYKIKVTAVNFKGTSNVTPIEVIGWSG*GRPTQAPGNLSLSQVASGTSAVLSW 240
+N F Y IKV + G P V+ + P+ P N+ + + + ++ ++ W
Sbjct: 187 SNLQEFTEYSIKVVGLTKDGIGPSNPA-VVAKTKEDVPSAPPDNMIIQDMFNISTIIVKW 245
Query: 241 TPV 249
+PV
Sbjct: 246 SPV 248
>SB_27459| Best HMM Match : fn3 (HMM E-Value=1.4e-23)
Length = 262
Score = 27.1 bits (57), Expect = 4.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 172 PTQAPGNLSLSQVASGTSAVLSWTPVAPSR 261
P AP N++ + S TS + W P+ PSR
Sbjct: 8 PQDAPANITAT-AESSTSIRVRWDPIDPSR 36
>SB_4468| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1513
Score = 27.1 bits (57), Expect = 4.2
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +3
Query: 180 SSGQPQPVAGGIRHQRRAQLDSRGAESLRGHFKGYKIQTWTDAEEDRVK 326
++G P VAG + AQ+D + +R H IQT D E R +
Sbjct: 49 AAGAPAYVAGPVDGSLYAQVDKNLKKHIRSHSLDSGIQTAADPYERRAQ 97
>SB_12326| Best HMM Match : fn3 (HMM E-Value=0.0006)
Length = 102
Score = 27.1 bits (57), Expect = 4.2
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 181 APGNLSLSQVASGTSAVLSWTPV 249
APGN+++ + +S V+SW PV
Sbjct: 5 APGNITVESFVTISSIVVSWDPV 27
>SB_15000| Best HMM Match : CRA_rpt (HMM E-Value=4)
Length = 433
Score = 26.6 bits (56), Expect = 5.5
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = -1
Query: 73 WGCWSPGVRFAASPGPGALPR 11
+GCW + FA P G PR
Sbjct: 122 YGCWPQQLNFAQPPDAGGFPR 142
>SB_13204| Best HMM Match : GRP (HMM E-Value=0.0017)
Length = 723
Score = 26.6 bits (56), Expect = 5.5
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2
Query: 249 HGSPAEHGAGAGCHLRQAEVAR 184
+G +G GAGC R++EVAR
Sbjct: 225 YGGLGYYGLGAGCCCRKSEVAR 246
>SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 2681
Score = 26.6 bits (56), Expect = 5.5
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 79 GRWGCWSPGVRFAASPGPG 23
G+WG WS +AS GPG
Sbjct: 1137 GKWGAWSDWGSCSASCGPG 1155
>SB_33342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1189
Score = 26.6 bits (56), Expect = 5.5
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 172 PTQAPGNLSLSQVASGTSAVLSWTP 246
P P L+L SGT+ ++SW P
Sbjct: 557 PKGPPTGLTLQAAQSGTALIVSWNP 581
>SB_39230| Best HMM Match : SNF2_N (HMM E-Value=1.40004e-41)
Length = 1682
Score = 26.2 bits (55), Expect = 7.3
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +3
Query: 159 RIGPTHSSSGQPQPVAGGIRHQRRAQLDSRGAESLRGHFKGYKIQTWTDAEE 314
R P S GQP ++G +RR+QL+ +L G G K++ W + E
Sbjct: 170 RKAPFKSKIGQPNVISGPTPLERRSQLN-----TLSGTL-GIKVEGWLSSPE 215
>SB_56303| Best HMM Match : Phage_Mu_Gam (HMM E-Value=4.9)
Length = 308
Score = 25.8 bits (54), Expect = 9.7
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +3
Query: 165 GPTHSSSGQPQPVAGGIRHQRRAQLDSRGAESLRGHFKGYKIQTWTDAE 311
G TH+ S P+P+ G IR + +++ A L FK K +T++E
Sbjct: 178 GRTHNRSRSPRPLRGDIRSVLAFEEEAKNA--LEEVFKRNKEGFYTESE 224
>SB_55420| Best HMM Match : fn3 (HMM E-Value=0)
Length = 789
Score = 25.8 bits (54), Expect = 9.7
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +1
Query: 172 PTQAPGNLSLSQVASGTSAVLSWTPVAPSR*GGTSK 279
P+ P NL+ V TS LSW P+A G K
Sbjct: 16 PSSPPVNLTAINVTK-TSITLSWGPIAEKHKNGIIK 50
>SB_9051| Best HMM Match : Y_phosphatase (HMM E-Value=0)
Length = 1831
Score = 25.8 bits (54), Expect = 9.7
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +1
Query: 13 WEEHQVRDWQQTEHLGTNTPTFQPYKIKVTAVNFKGTS 126
W RD E + TNT + + + VNF+G S
Sbjct: 234 WRNASHRDITSAETIATNTNSVNGWTKSLLRVNFEGVS 271
>SB_3077| Best HMM Match : fn3 (HMM E-Value=8e-28)
Length = 465
Score = 25.8 bits (54), Expect = 9.7
Identities = 21/82 (25%), Positives = 30/82 (36%)
Frame = +1
Query: 10 PWEEHQVRDWQQTEHLGTNTPTFQPYKIKVTAVNFKGTSNVTPIEVIGWSG*GRPTQAPG 189
PW+ QV D + Y ++V A KG T E+ + P P
Sbjct: 44 PWDIIQVNDSSAEVWTVDDLWPLTLYTMQVAAFTLKGVGPWTS-EIEVTTDEAAPAYPPE 102
Query: 190 NLSLSQVASGTSAVLSWTPVAP 255
+ AS + L WTP+ P
Sbjct: 103 DFR-GHFASSVAVKLYWTPIPP 123
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,341,563
Number of Sequences: 59808
Number of extensions: 257427
Number of successful extensions: 893
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 523129866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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