Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021106X
         (349 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    29   0.021
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   1.4  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   1.4  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   1.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   5.5  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   5.5  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    20   7.3  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    20   7.3  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    20   7.3  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    20   7.3  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    20   7.3  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     20   9.6  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    20   9.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          20   9.6  

>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 28.7 bits (61), Expect = 0.021
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 161 PDQPITSMGVTFDVPLKFTAVTLIL*GWKV 72
           PDQ I    +TFD+P +   +  I+ GW++
Sbjct: 100 PDQKIEINFITFDIPCEHRGLVSIIDGWEL 129


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 343 GLHKDLLTRSSSASVQVWILYPLKCPLSDS 254
           G H +LL+ S S   +    YP   PLS S
Sbjct: 77  GCHSNLLSTSPSGQNKAVAPYPPNHPLSGS 106


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 343 GLHKDLLTRSSSASVQVWILYPLKCPLSDS 254
           G H +LL+ S S   +    YP   PLS S
Sbjct: 77  GCHSNLLSTSPSGQNKAVAPYPPNHPLSGS 106


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 5/19 (26%), Positives = 14/19 (73%)
 Frame = -3

Query: 176 VGRPYPDQPITSMGVTFDV 120
           + +P P+Q + ++G ++D+
Sbjct: 43  ISQPIPNQELQNLGASYDI 61


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 273 SAPSATRRHGSPAEHGAGAG 214
           SAPS++     PA+  A AG
Sbjct: 519 SAPSSSTSSSPPAKGAAAAG 538


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 20.6 bits (41), Expect = 5.5
 Identities = 13/42 (30%), Positives = 16/42 (38%)
 Frame = -2

Query: 249 HGSPAEHGAGAGCHLRQAEVARSLSGSALSGPADHFNGSHVR 124
           HG    H       L+ AEV R    +  +   D    SHVR
Sbjct: 90  HGEVNVHQRSLSSFLKTAEVLRVSGLTQQADQTDRDELSHVR 131


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -3

Query: 68  VLVPRCSVCCQS 33
           V+VP C  CC S
Sbjct: 348 VIVPFCPDCCPS 359


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -3

Query: 68  VLVPRCSVCCQS 33
           V+VP C  CC S
Sbjct: 348 VIVPFCPDCCPS 359


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = +1

Query: 4   GQPWEEHQVRDWQQTEHLGTNTPTFQ 81
           G     +++ +++++EH GTN   +Q
Sbjct: 394 GDGLARYEILNFRKSEHNGTNGYQYQ 419


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -3

Query: 68  VLVPRCSVCCQS 33
           V+VP C  CC S
Sbjct: 348 VIVPFCPDCCPS 359


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 20.2 bits (40), Expect = 7.3
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = +1

Query: 4   GQPWEEHQVRDWQQTEHLGTNTPTFQ 81
           G     +++ +++++EH GTN   +Q
Sbjct: 484 GDGLARYEILNFRKSEHNGTNGYQYQ 509


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +2

Query: 284 QNPDLDRRRGGP 319
           +NP+ DR +G P
Sbjct: 319 KNPNFDRMQGNP 330


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +3

Query: 63  QHPHLPALQDQGDGGELQRNIE 128
           QHPH+   Q Q      Q++++
Sbjct: 175 QHPHMQPQQGQHQSQAQQQHLQ 196


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 19.8 bits (39), Expect = 9.6
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +1

Query: 37  WQQTEHLGTNTP 72
           WQ+   LG +TP
Sbjct: 445 WQRAHRLGIDTP 456


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,610
Number of Sequences: 438
Number of extensions: 2423
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7936320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)