Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021106X
         (349 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g39720.1 68415.m04874 zinc finger (C3HC4-type RING finger) fa...    28   2.0  
At4g14815.1 68417.m02278 protease inhibitor/seed storage/lipid t...    27   4.5  
At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEME...    26   6.0  
At5g53150.1 68418.m06607 DNAJ heat shock N-terminal domain-conta...    26   7.9  
At4g17130.1 68417.m02579 hypothetical protein                          26   7.9  
At3g58710.2 68416.m06544 WRKY family transcription factor contai...    26   7.9  
At3g58710.1 68416.m06543 WRKY family transcription factor contai...    26   7.9  
At3g07390.1 68416.m00881 auxin-responsive protein / auxin-induce...    26   7.9  
At1g67170.1 68414.m07641 expressed protein similar to enterophil...    26   7.9  

>At2g39720.1 68415.m04874 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 401

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
 Frame = +3

Query: 3   GTTLGRAPGPGLAANRTPGDQH---PHLPALQDQGDGGEL 113
           G T+ R PG G A  R PG        +P +  + DGG L
Sbjct: 274 GLTIWRLPGGGFAVGRIPGGWRGGDRMMPVVYTEVDGGRL 313


>At4g14815.1 68417.m02278 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein contains Pfam
           protease inhibitor/seed storage/LTP family domain
           PF00234
          Length = 156

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 213 CHLRQAEVARSLSGSALSGPADHFNGS 133
           CH+     +R  SGS+++  ++H NGS
Sbjct: 93  CHVETPPASRCHSGSSVNSHSEHGNGS 119


>At5g04560.1 68418.m00456 DEMETER protein (DME) identical to DEMETER
           protein [Arabidopsis thaliana] GI:21743571; contains
           Pfam profile PF00730: HhH-GPD superfamily base excision
           DNA repair protein
          Length = 1729

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 349 RVGLHKDLLTRSSSASVQVWILYPLKCPLSDSAPR 245
           R G  K +   + ++ +Q+W   P K PLS S P+
Sbjct: 591 RAGRKKSVPPPAHASEIQLWQPTPPKTPLSRSKPK 625


>At5g53150.1 68418.m06607 DNAJ heat shock N-terminal
           domain-containing protein low similarity to AHM1
           [Triticum aestivum] GI:6691467; contains Pfam profile
           PF00226: DnaJ domain
          Length = 755

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 82  PYKIKVTAVNFKGTSNVTPIEVIG 153
           P+K+K++ +N K TS   PI+ +G
Sbjct: 526 PFKLKISWLNSKTTSEFGPIDWMG 549


>At4g17130.1 68417.m02579 hypothetical protein
          Length = 747

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 190 NLSLSQVASGTSAVLSWTPVAPSR*GGTSKDTK 288
           N +L +V    S  L W+P+A    GG+S D K
Sbjct: 575 NTNLMRVKRPLSFKLIWSPLASGGLGGSSMDDK 607


>At3g58710.2 68416.m06544 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain
          Length = 271

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 164 RADPLKLRATSACRRWHPAPA 226
           R DP KL  T AC   HP P+
Sbjct: 111 RVDPSKLMITYACDHNHPFPS 131


>At3g58710.1 68416.m06543 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain
          Length = 272

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 164 RADPLKLRATSACRRWHPAPA 226
           R DP KL  T AC   HP P+
Sbjct: 112 RVDPSKLMITYACDHNHPFPS 132


>At3g07390.1 68416.m00881 auxin-responsive protein / auxin-induced
           protein (AIR12) identical (with 7 residue gap) to
           auxin-induced protein AIR12 GI:11357190 [Arabidopsis
           thaliana]
          Length = 273

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 15  GRAPGPGLAANRTPGDQHPHLPALQDQGDGGELQRNI 125
           G AP PG + + TPG       A    G+ G L RN+
Sbjct: 225 GSAPAPGTSGSTTPG------TAAGGPGNAGSLTRNV 255


>At1g67170.1 68414.m07641 expressed protein similar to
           enterophilin-2L (GI:12718845) [Cavia porcellus]; similar
           to Hyaluronan mediated motility receptor (Intracellular
           hyaluronic acid binding protein) (Receptor for
           hyaluronan-mediated motility) (CD168 antigen)
           (Swiss-Prot:O75330) [Homo sapiens]
          Length = 359

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +2

Query: 251 RRVAEGALQRIQNPDLDRRRGGP-GQEIFVESDA 349
           R V +   Q + N + DRR GGP G  I  E DA
Sbjct: 224 REVEKLQAQLMNNANSDRRAGGPYGNNINAEIDA 257


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,408,229
Number of Sequences: 28952
Number of extensions: 170391
Number of successful extensions: 486
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 429398688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)