Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021104
         (715 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   3.5  
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni...    26   6.1  
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.1  

>SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 237

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = -3

Query: 617 SLVSNKTHFNNKDKCRVLSEMS--IKSNSLSSLDIPEKEQCSRTRF 486
           S+  N  H   K     L +++  +KS SLS LDIPE    +   F
Sbjct: 36  SIFKNPKHHGEKKPFHCLFKLAGTMKSISLSHLDIPEHRMSNAVAF 81


>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
           Cct1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 339 RIYHLITNLMLNTKGISDVCFK 404
           +I +   N++L TKGI D+C K
Sbjct: 282 KILNAGANVILTTKGIDDLCLK 303


>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 657

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 566 IRDIYLCY*NAFYLILATRPRFTSETNFIIDFLHYLMDVI 685
           + D+   + NAFY I+    +    +  I DF ++L DVI
Sbjct: 440 LNDVVREFMNAFYNIIYEAHQAADFSQAIYDFQYFLWDVI 479


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,763,021
Number of Sequences: 5004
Number of extensions: 54748
Number of successful extensions: 120
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)