Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021055
         (672 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    24   0.99 
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   4.0  
DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory pro...    22   5.3  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   9.2  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 24.2 bits (50), Expect = 0.99
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 494 PSVSPY*AATSSTRGTPAYEARPPTVS 414
           P+ +P   AT +   TP+  A PPTV+
Sbjct: 211 PAAAPRSVATPTGIPTPSTSASPPTVN 237


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = -2

Query: 569 GARFNCTSTIATIAKPESRAVFCWKPSVSPY*AATSSTRGTPA 441
           G  ++  ST+ T     S  + CW  + SP      S + TP+
Sbjct: 301 GPTYSTWSTVQTPTTVMSPTINCWSLTSSPPPPYQISAQPTPS 343


>DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory
           protein 20 protein.
          Length = 124

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 170 QKEGLSCNLFRYVGLVSQYWWKQLPLRF 253
           QK+G    + +++    Q WWKQL  ++
Sbjct: 81  QKQGAK-TVIQHLYKNKQDWWKQLEAKY 107


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
 Frame = -2

Query: 545 TIATIAKP--ESRAVFCWKPSVSPY*AATSSTRGTPAYEARPPTVSASH 405
           T   +A P  +SR    W P+ +    AT       A     P+VS+ H
Sbjct: 91  TYYNLADPARDSRKGLFWSPAATAAATATEYKYSAAAPGPSDPSVSSCH 139


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,871
Number of Sequences: 336
Number of extensions: 3728
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17489640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)