Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021055
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo...    27   1.9  
SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyc...    25   9.9  

>SPBC16A3.12c |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 443

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 286 SKTEQGLNGCITKSRIFYSLITEAGYKIYP-LIKTQVRYV 402
           SKT  G+   + K R  Y +    GY++   L++TQ  ++
Sbjct: 59  SKTTDGMTDAVQKCRNIYEICEAFGYRVEEHLVRTQDNFI 98


>SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 542 IATIAKPESRAVFCW 498
           I T+A P SRA  CW
Sbjct: 117 IFTLASPSSRAFLCW 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,855,022
Number of Sequences: 5004
Number of extensions: 60193
Number of successful extensions: 114
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)