Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021055
         (672 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0767 + 19389337-19389381,19390586-19390643,19390720-193907...    31   0.63 
09_02_0245 - 6198271-6198437,6198496-6198559,6199011-6199259,619...    30   1.5  
07_01_0387 + 2902957-2904705                                           29   2.6  
07_01_0641 - 4790704-4790720,4790824-4791296,4791707-4792023,479...    28   7.8  

>04_03_0767 +
           19389337-19389381,19390586-19390643,19390720-19390759,
           19390859-19390926,19391007-19391081,19391161-19391216,
           19391317-19391361,19391450-19391701,19391787-19391881,
           19392395-19392485,19392578-19392688,19392788-19392982,
           19393071-19393262
          Length = 440

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 14/25 (56%), Positives = 20/25 (80%)
 Frame = -3

Query: 481 PTKLQLPPREVRRRMKPVPRLYRRL 407
           PT+ QLPP+E  RR+ P+PRL +R+
Sbjct: 200 PTEPQLPPKERERRV-PMPRLRKRI 223


>09_02_0245 -
           6198271-6198437,6198496-6198559,6199011-6199259,
           6199796-6199864,6199956-6200006,6200967-6201014,
           6201175-6201255,6202793-6202831,6203045-6203128,
           6204524-6204728,6205041-6205143,6205224-6205353,
           6206059-6206250
          Length = 493

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -1

Query: 360 SCFSDQRIEYSGFRYAAIQSLLSFGHQLLEGYRPPVKR 247
           +CFS Q ++Y   RY   Q++ S+     E ++ P+ R
Sbjct: 211 NCFSVQALQYLSVRYGVFQAVYSYWKDKRERWQKPILR 248


>07_01_0387 + 2902957-2904705
          Length = 582

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 484 RPTKLQLPPREVRRRMKPVPRL 419
           RP ++  PP E RRRM P+ RL
Sbjct: 42  RPMRVSAPPVEPRRRMNPLQRL 63


>07_01_0641 -
           4790704-4790720,4790824-4791296,4791707-4792023,
           4792094-4792423
          Length = 378

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
 Frame = -1

Query: 426 PDCIGVSPDITHLCFYKRIDLISCFSD---QRIEYSGFRYAAIQ 304
           P  +G +P   H C Y R  L  CFSD    RI  S  +Y  I+
Sbjct: 185 PAMVGSTPFCDHQCGYWRGALYVCFSDCFVMRISPSDNKYRVIR 228


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,956,170
Number of Sequences: 37544
Number of extensions: 413120
Number of successful extensions: 892
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)