Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021055
         (672 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52913| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.017
SB_34010| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_27922| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_7282| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.0  
SB_43900| Best HMM Match : ResIII (HMM E-Value=0.53)                   28   6.0  

>SB_52913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 36.7 bits (81), Expect = 0.017
 Identities = 16/32 (50%), Positives = 22/32 (68%)
 Frame = +3

Query: 576 VPKEMLVAFTVCTTLLVESTCSRLMISTCILP 671
           +P  +L+AF+V TT+L+      LMIS CILP
Sbjct: 59  IPGGLLIAFSVMTTILISVHVFALMISVCILP 90



 Score = 32.7 bits (71), Expect = 0.28
 Identities = 14/19 (73%), Positives = 17/19 (89%)
 Frame = +2

Query: 452 LSWRKLQLSRAKLKASSKT 508
           LSWR+L L+R KLKASS+T
Sbjct: 20  LSWRRLLLTRGKLKASSRT 38



 Score = 32.3 bits (70), Expect = 0.37
 Identities = 13/19 (68%), Positives = 18/19 (94%)
 Frame = +1

Query: 502 QNTALLSGFAMVAMVEVQL 558
           + +AL+SGFAM+AMVE+QL
Sbjct: 37  RTSALMSGFAMIAMVEIQL 55


>SB_34010| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = -3

Query: 454 EVRRRMKPVPRLYRRLTRHNALVFL*EDRSYILLQ*SENRIFGISLCSHSV 302
           + R +++ V  +      HN   FL ED++Y LL+ ++   FG   CS ++
Sbjct: 43  QFRHKLQEVVMVEETAEEHNITAFLKEDQTYTLLKNTDVGRFGDFSCSGTI 93


>SB_27922| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1704

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -1

Query: 417  IGVSPDITH--LCFYKRIDLISCFSDQRIEYSGFRYAAIQ 304
            +G SP+ +   +C   R D +    D ++E  GFRYA ++
Sbjct: 1541 VGPSPEKSDKFVCQLNRFDRVQKLDDFKVEMQGFRYADLK 1580


>SB_7282| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1702

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 337  RIFGISLCSHSVLAQFWTPITRRISAACK 251
            + FGI     SVLAQ W  IT+  +AA +
Sbjct: 1470 KFFGIEYAHVSVLAQVWVDITKCYAAAAQ 1498


>SB_43900| Best HMM Match : ResIII (HMM E-Value=0.53)
          Length = 540

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 650 HEPRACGLD*ECCAHR 603
           H P+  GLD ECC HR
Sbjct: 397 HRPQLRGLDHECCVHR 412


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,863,214
Number of Sequences: 59808
Number of extensions: 488779
Number of successful extensions: 1142
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1139
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)