Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021055
         (672 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g03890.2 68416.m00403 expressed protein                             28   4.9  
At3g03890.1 68416.m00402 expressed protein                             28   4.9  
At5g48090.1 68418.m05941 expressed protein ; expression supporte...    27   8.6  

>At3g03890.2 68416.m00403 expressed protein
          Length = 305

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = -3

Query: 649 MSREHVDSTKSVVHTVKATSISFGTAVGLDL 557
           M+++H + TK++VH +  TSI   +A+ LDL
Sbjct: 247 MNKDHEEDTKAIVHNI--TSIPVESALMLDL 275


>At3g03890.1 68416.m00402 expressed protein
          Length = 321

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = -3

Query: 649 MSREHVDSTKSVVHTVKATSISFGTAVGLDL 557
           M+++H + TK++VH +  TSI   +A+ LDL
Sbjct: 247 MNKDHEEDTKAIVHNI--TSIPVESALMLDL 275


>At5g48090.1 68418.m05941 expressed protein ; expression supported
           by MPSS
          Length = 636

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -1

Query: 390 LCFYKRIDLISCFSDQRIEYSGFRYAAIQSLLSFGHQLLEGYRPP 256
           +CFYK +DLI   ++   E   +  +  +  L  G QL+ G  PP
Sbjct: 458 ICFYKNLDLIPPKNNFNFEMRDW-LSVKEEELPDGSQLIMGLNPP 501


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,059,326
Number of Sequences: 28952
Number of extensions: 323090
Number of successful extensions: 694
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)