Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021054
(711 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110501-4|CAB54510.1| 368|Caenorhabditis elegans Hypothetical ... 104 5e-23
AL034393-7|CAA22322.2| 337|Caenorhabditis elegans Hypothetical ... 43 2e-04
Z81099-1|CAB03187.1| 600|Caenorhabditis elegans Hypothetical pr... 38 0.009
AL132904-13|CAC35846.4| 778|Caenorhabditis elegans Hypothetical... 37 0.012
AC024857-1|AAK31566.2| 869|Caenorhabditis elegans Temporarily a... 36 0.022
Z83120-6|CAB76722.1| 809|Caenorhabditis elegans Hypothetical pr... 35 0.050
Z35663-5|CAA84727.1| 681|Caenorhabditis elegans Hypothetical pr... 34 0.087
U42835-4|AAA83588.1| 611|Caenorhabditis elegans Uncoordinated p... 34 0.12
AF324437-1|AAK11613.1| 611|Caenorhabditis elegans UNC-78 protein. 34 0.12
AC024818-3|AAF60780.2| 453|Caenorhabditis elegans Hypothetical ... 33 0.27
Z80215-3|CAB02270.1| 496|Caenorhabditis elegans Hypothetical pr... 32 0.35
U23412-5|AAK21467.2| 492|Caenorhabditis elegans Hypothetical pr... 32 0.47
U42835-5|AAO61444.1| 517|Caenorhabditis elegans Uncoordinated p... 30 1.4
U23139-7|AAK31492.1| 929|Caenorhabditis elegans Hypothetical pr... 30 1.4
AC006708-15|AAF60425.1| 504|Caenorhabditis elegans Hypothetical... 30 1.4
U21322-6|AAN65314.2| 669|Caenorhabditis elegans Hypothetical pr... 30 1.9
U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical pr... 30 1.9
AL021481-1|CAA16333.1| 363|Caenorhabditis elegans Hypothetical ... 30 1.9
U21321-1|AAG00051.1| 507|Caenorhabditis elegans Fizzy (cdc20 pr... 29 3.3
Z93374-2|CAB07553.2| 348|Caenorhabditis elegans Hypothetical pr... 29 4.3
AC026301-5|AAK68894.1| 745|Caenorhabditis elegans Hypothetical ... 29 4.3
Z81531-5|CAB04319.1| 1152|Caenorhabditis elegans Hypothetical pr... 28 5.7
AC024214-17|AAF36082.1| 313|Caenorhabditis elegans Nuclear pore... 28 5.7
Z81490-1|CAB04014.1| 510|Caenorhabditis elegans Hypothetical pr... 28 7.6
Z47358-8|CAA87433.1| 702|Caenorhabditis elegans Hypothetical pr... 28 7.6
Z31590-4|CAD27606.1| 495|Caenorhabditis elegans Hypothetical pr... 28 7.6
Z31590-3|CAD27605.1| 607|Caenorhabditis elegans Hypothetical pr... 28 7.6
Z31590-2|CAD27604.1| 538|Caenorhabditis elegans Hypothetical pr... 28 7.6
Z31590-1|CAA83461.1| 605|Caenorhabditis elegans Hypothetical pr... 28 7.6
AF330595-1|AAK00353.1| 510|Caenorhabditis elegans SMU-1 protein. 28 7.6
>AL110501-4|CAB54510.1| 368|Caenorhabditis elegans Hypothetical
protein Y79H2A.6 protein.
Length = 368
Score = 104 bits (250), Expect = 5e-23
Identities = 46/92 (50%), Positives = 60/92 (65%)
Frame = +3
Query: 255 AFSPNNNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGD 434
A S ++N++HI++ DW+ + L EHDL V G+DW TNRIV+CS D+NA+VWT D
Sbjct: 30 AVSASSNDIHIFEWRNGDWQSIHTLSEHDLPVTGLDWGTKTNRIVSCSQDKNAFVWT-FD 88
Query: 435 DGKWATTLVLLRINRAATCVKWSPMRTSLLSG 530
W LVL+R NRAAT VKWSP+ G
Sbjct: 89 KNVWKPELVLVRFNRAATYVKWSPLENKFAVG 120
Score = 69.7 bits (163), Expect = 2e-12
Identities = 27/33 (81%), Positives = 32/33 (96%)
Frame = +2
Query: 509 ENKFAVGSGARLISICYFEKENNWWVSKHIKKP 607
ENKFAVGSGA+L+S+CY+EKEN+WWVSK IKKP
Sbjct: 114 ENKFAVGSGAKLVSVCYYEKENDWWVSKQIKKP 146
Score = 54.0 bits (124), Expect = 1e-07
Identities = 23/31 (74%), Positives = 25/31 (80%)
Frame = +1
Query: 607 IRSTVTSIDWHPNNILLVAGSADFKVRVFSA 699
IRSTVT +DWH NN+LL GS DFK RVFSA
Sbjct: 147 IRSTVTCLDWHSNNVLLAVGSCDFKCRVFSA 177
Score = 35.1 bits (77), Expect = 0.050
Identities = 12/14 (85%), Positives = 14/14 (100%)
Frame = +1
Query: 214 PITCHAWNKDRSQM 255
PITCHAWNKDR+Q+
Sbjct: 16 PITCHAWNKDRTQI 29
>AL034393-7|CAA22322.2| 337|Caenorhabditis elegans Hypothetical
protein Y18D10A.9 protein.
Length = 337
Score = 42.7 bits (96), Expect = 2e-04
Identities = 20/83 (24%), Positives = 41/83 (49%)
Frame = +3
Query: 279 VHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTL 458
V +Y++E ++ + N L H+ V ++ + + TCS D++ + W Q +D ++ +
Sbjct: 91 VVVYQQEDGEFAEVNKLEGHESEVKCAVFSKSDEFLATCSRDKSVWFWQQDEDEDFSVSS 150
Query: 459 VLLRINRAATCVKWSPMRTSLLS 527
+L + V W P L+S
Sbjct: 151 ILQPHTQDVKQVAWHPTEDLLVS 173
>Z81099-1|CAB03187.1| 600|Caenorhabditis elegans Hypothetical
protein K08F9.2 protein.
Length = 600
Score = 37.5 bits (83), Expect = 0.009
Identities = 16/72 (22%), Positives = 33/72 (45%)
Frame = +3
Query: 321 NNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKW 500
N+ H +V+ + W+P+ R+ T S+D + +W G+ + + V+W
Sbjct: 519 NSWTFHTSKVLTVAWSPDNQRLATGSIDTSVIIWDMKKPGEHPVIIKGAHPMSSVNVVRW 578
Query: 501 SPMRTSLLSGQE 536
T + +GQ+
Sbjct: 579 LDETTVVSAGQD 590
Score = 31.1 bits (67), Expect = 0.81
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +3
Query: 330 VEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 422
V H + + W+P+ +RI T S D++ +W
Sbjct: 234 VAHTGSIFALAWSPDQSRIATASADKSVKIW 264
>AL132904-13|CAC35846.4| 778|Caenorhabditis elegans Hypothetical
protein Y111B2A.17 protein.
Length = 778
Score = 37.1 bits (82), Expect = 0.012
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +3
Query: 303 NDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQ 428
++W + + ++ H L V I W P+ R++T S DR A ++T+
Sbjct: 596 SNWSKKSEIIGHQLTVTQIAWNPSGTRLLTVSRDRTAKLYTE 637
>AC024857-1|AAK31566.2| 869|Caenorhabditis elegans Temporarily
assigned gene nameprotein 305 protein.
Length = 869
Score = 36.3 bits (80), Expect = 0.022
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = +3
Query: 288 YKKEGNDWKQTN-NLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVL 464
+K +D + N NL H + + W + +++ +C YVW + DD +W+ LV
Sbjct: 51 FKPTPDDLTRYNFNLRGHHNAIRMVTWNKSQSKLASCDASGIIYVWVRNDD-RWSVELVN 109
Query: 465 LRINRAATCVKWSPMRTSLL 524
R + + + WSP S L
Sbjct: 110 DRGVKVSD-LSWSPCGGSAL 128
>Z83120-6|CAB76722.1| 809|Caenorhabditis elegans Hypothetical
protein R06A4.9 protein.
Length = 809
Score = 35.1 bits (77), Expect = 0.050
Identities = 24/90 (26%), Positives = 37/90 (41%)
Frame = +3
Query: 339 DLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSPMRTS 518
D + G+ +AP + T S D A VW D ++ VL C+ W P +
Sbjct: 217 DEAIRGLAFAPTDVKFATASDDGTARVW---DFARYTEERVLRGHGAEVRCIDWHPTKGL 273
Query: 519 LLSGQELD*YQFAILRRKIIGGCLSILRSH 608
+ +G D Q + G CL+ L+ H
Sbjct: 274 IATGSR-DTQQPVKIWDPKSGSCLATLQEH 302
>Z35663-5|CAA84727.1| 681|Caenorhabditis elegans Hypothetical
protein T04A8.7a protein.
Length = 681
Score = 34.3 bits (75), Expect = 0.087
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Frame = +3
Query: 303 NDWKQTNNLVEHDLRVMGIDWAPNTNRIVTC----SVDRNAYVWTQGDDGKWATTL 458
+ +KQ V+ D V G++WAP ++ + D+NA V+ + + GKW+ T+
Sbjct: 51 SSYKQFGLNVQPDNSVKGLEWAPAAEKLALIGDFNNWDQNANVYKKEEHGKWSITV 106
>U42835-4|AAA83588.1| 611|Caenorhabditis elegans Uncoordinated
protein 78, isoform a protein.
Length = 611
Score = 33.9 bits (74), Expect = 0.12
Identities = 17/73 (23%), Positives = 30/73 (41%)
Frame = +3
Query: 318 TNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVK 497
TN+ H +V + W+P+ R+ T S+D + VW + + V
Sbjct: 529 TNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVI 588
Query: 498 WSPMRTSLLSGQE 536
W T + +GQ+
Sbjct: 589 WLNETTIVSAGQD 601
Score = 30.3 bits (65), Expect = 1.4
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 330 VEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 422
V H V G+ W+P+ +I + S D+ +W
Sbjct: 236 VAHSGSVFGLTWSPDGTKIASASADKTIKIW 266
>AF324437-1|AAK11613.1| 611|Caenorhabditis elegans UNC-78 protein.
Length = 611
Score = 33.9 bits (74), Expect = 0.12
Identities = 17/73 (23%), Positives = 30/73 (41%)
Frame = +3
Query: 318 TNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVK 497
TN+ H +V + W+P+ R+ T S+D + VW + + V
Sbjct: 529 TNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVI 588
Query: 498 WSPMRTSLLSGQE 536
W T + +GQ+
Sbjct: 589 WLNETTIVSAGQD 601
Score = 30.3 bits (65), Expect = 1.4
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 330 VEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 422
V H V G+ W+P+ +I + S D+ +W
Sbjct: 236 VAHSGSVFGLTWSPDGTKIASASADKTIKIW 266
>AC024818-3|AAF60780.2| 453|Caenorhabditis elegans Hypothetical
protein Y54H5A.1 protein.
Length = 453
Score = 32.7 bits (71), Expect = 0.27
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +3
Query: 354 GIDWAP-NTNRIVTCSVDRNAYVWTQGDDGKWAT-TLVLLRINRAATCVKWSPMRTSLLS 527
G+ W+ T + T + + Y+W + G+WA L ++ + WSP T LL+
Sbjct: 233 GLAWSSLKTGDLATGDIIKKIYLWQMKEGGQWAVGANPLTGHKKSVEDLAWSPTETGLLA 292
Query: 528 GQELD 542
D
Sbjct: 293 SCSAD 297
>Z80215-3|CAB02270.1| 496|Caenorhabditis elegans Hypothetical
protein C36B1.5 protein.
Length = 496
Score = 32.3 bits (70), Expect = 0.35
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +3
Query: 309 WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGD 434
W+ L HD R++ +D +P+ + + + DR +W Q D
Sbjct: 454 WQPLRQLQGHDTRILCVDISPDGQWMCSSAFDRTFKLWAQSD 495
>U23412-5|AAK21467.2| 492|Caenorhabditis elegans Hypothetical
protein T10F2.4 protein.
Length = 492
Score = 31.9 bits (69), Expect = 0.47
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +3
Query: 309 WKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWT 425
W + +L +H V G+ + N +VTCS+D++ V++
Sbjct: 453 WSEVVSLSDHSGPVTGVRFGENARSLVTCSLDKSLRVFS 491
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +1
Query: 619 VTSIDWHPNNILLVAGSADFKVRVFSA 699
+ ++ HP+NI ++ SAD +RV+SA
Sbjct: 254 INAVVLHPDNITAISASADSHIRVWSA 280
>U42835-5|AAO61444.1| 517|Caenorhabditis elegans Uncoordinated
protein 78, isoform b protein.
Length = 517
Score = 30.3 bits (65), Expect = 1.4
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +3
Query: 330 VEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 422
V H V G+ W+P+ +I + S D+ +W
Sbjct: 236 VAHSGSVFGLTWSPDGTKIASASADKTIKIW 266
>U23139-7|AAK31492.1| 929|Caenorhabditis elegans Hypothetical
protein F13H8.2 protein.
Length = 929
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +3
Query: 270 NNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 422
NN +Y N K +L H L V +D AP++ VT SVD++ VW
Sbjct: 565 NNTCSVYFV--NTLKFFVSLYGHSLPVTCVDIAPSSKLCVTGSVDKSVKVW 613
>AC006708-15|AAF60425.1| 504|Caenorhabditis elegans Hypothetical
protein Y110A7A.8 protein.
Length = 504
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -2
Query: 434 ISLSPDVSITV-NRTRNNTVGVGS-PINPHHSKVVFHKVVCLLP 309
++ P ++ V +T+ N +G + NPHH + FH++V +P
Sbjct: 250 LATMPSCNVQVLGKTKKNLIGFSTVSTNPHHGFIYFHQLVQKMP 293
>U21322-6|AAN65314.2| 669|Caenorhabditis elegans Hypothetical
protein K10D2.1b protein.
Length = 669
Score = 29.9 bits (64), Expect = 1.9
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +1
Query: 619 VTSIDWHPNNILLVAGSADFKVRVFSA 699
V +++W PN L +GS D+++ +++A
Sbjct: 136 VLTVEWSPNGKYLASGSIDYRIIIYNA 162
>U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical
protein K10D2.1a protein.
Length = 1223
Score = 29.9 bits (64), Expect = 1.9
Identities = 9/27 (33%), Positives = 19/27 (70%)
Frame = +1
Query: 619 VTSIDWHPNNILLVAGSADFKVRVFSA 699
V +++W PN L +GS D+++ +++A
Sbjct: 424 VLTVEWSPNGKYLASGSIDYRIIIYNA 450
>AL021481-1|CAA16333.1| 363|Caenorhabditis elegans Hypothetical
protein Y43F4B.4 protein.
Length = 363
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +3
Query: 291 KKEGNDWKQTNNLVEHDLRVMGIDWA-PNTNRIV-TCSVDRNAYVWTQ 428
K +GN W+++ + H V + WA P +IV TCS DR +W +
Sbjct: 47 KPDGN-WRRSAHWKCHGGAVWRVIWAHPEFGQIVATCSYDRTIVIWEE 93
Score = 29.5 bits (63), Expect = 2.5
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +3
Query: 357 IDWAPNTNRIVTCSVDRNAYVWTQGDDGKW 446
+ + P+ R+ TC+ D +W + DG W
Sbjct: 23 VSFDPHGRRMATCASDMTMAIWDRKPDGNW 52
>U21321-1|AAG00051.1| 507|Caenorhabditis elegans Fizzy (cdc20
protein family) homologprotein 1 protein.
Length = 507
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +3
Query: 270 NNEVHIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 422
N++V I + + W N H V ++W+ + N V+ S DR A +W
Sbjct: 295 NHDVRISQHVVSSWGGDNG---HCRDVTALEWSADENMCVSGSSDRTAKIW 342
>Z93374-2|CAB07553.2| 348|Caenorhabditis elegans Hypothetical
protein C06C6.3 protein.
Length = 348
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/57 (26%), Positives = 30/57 (52%)
Frame = -2
Query: 407 TVNRTRNNTVGVGSPINPHHSKVVFHKVVCLLPVISFLFVYVNFIIVW*ECI*LLSL 237
T+N+TRN G +N V+F K L + ++ +Y++ ++ C+ LL++
Sbjct: 9 TLNKTRNVLTYFGISVNAILVPVIFLKSPKDLGLYKYMMIYISTFEIFFGCVELLTI 65
>AC026301-5|AAK68894.1| 745|Caenorhabditis elegans Hypothetical
protein Y54F10BM.3 protein.
Length = 745
Score = 28.7 bits (61), Expect = 4.3
Identities = 21/85 (24%), Positives = 37/85 (43%)
Frame = +3
Query: 288 YKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLL 467
+KK N+ ++ VE R G D +++ ++D Y G GK A +
Sbjct: 290 FKKPQNELRENEVWVE---RQTGPDIDKDSDPKTENALDEQDYQLEDGWHGKSALNITRK 346
Query: 468 RINRAATCVKWSPMRTSLLSGQELD 542
+ T + +SP S++ G+E D
Sbjct: 347 EFKKLFTKMSYSPSMCSIIPGKERD 371
>Z81531-5|CAB04319.1| 1152|Caenorhabditis elegans Hypothetical protein
F36D3.5 protein.
Length = 1152
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +3
Query: 282 HIYKKEGNDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDD 437
HI+ E D K TN+ +E + + APNT ++ D N + T D
Sbjct: 931 HIWMDERTDNKITNDFMEKFQAITSDEAAPNTTHVIV-KTDENGVLETDDLD 981
>AC024214-17|AAF36082.1| 313|Caenorhabditis elegans Nuclear pore
complex protein protein20, isoform a protein.
Length = 313
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 7/81 (8%)
Frame = +3
Query: 288 YKKEGNDWKQTNNLVEHDLRVMGIDWAPNT------NRIVTCSVDRNAYVWTQGD-DGKW 446
Y N+W + H+ V + WAP + R+V+ D+N +W D +W
Sbjct: 135 YDNSSNEWISSKIQKCHEQGVNSVCWAPGSADPAAKKRLVSAGNDKNVKIWAFDDATNEW 194
Query: 447 ATTLVLLRINRAATCVKWSPM 509
L W P+
Sbjct: 195 ILEKTLAGHTDFVREAAWCPV 215
>Z81490-1|CAB04014.1| 510|Caenorhabditis elegans Hypothetical
protein CC4.3 protein.
Length = 510
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Frame = +3
Query: 246 KSNAFSPNNNEVHIYKKEG-NDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 422
K N+ + H+ + G K + H + + ++ N I++CS D + VW
Sbjct: 317 KDNSHILSGGNDHVVRVHGMKSGKCLKEMRGHSSYITDVRYSDEGNHIISCSTDGSIRVW 376
Query: 423 TQGDDGKWATT 455
G G+ +T
Sbjct: 377 -HGKSGECLST 386
>Z47358-8|CAA87433.1| 702|Caenorhabditis elegans Hypothetical
protein ZK1307.6 protein.
Length = 702
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/66 (25%), Positives = 25/66 (37%)
Frame = +3
Query: 327 LVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVWTQGDDGKWATTLVLLRINRAATCVKWSP 506
L H V G+ W+P+ + + D VW + T + N A + WSP
Sbjct: 518 LTNHRQEVCGLKWSPDKQLLASGGNDNQLLVWNLRRNEPIQT---YTQHNAAVKALAWSP 574
Query: 507 MRTSLL 524
LL
Sbjct: 575 HHHGLL 580
>Z31590-4|CAD27606.1| 495|Caenorhabditis elegans Hypothetical
protein R01H10.3d protein.
Length = 495
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +3
Query: 336 HDLRVMGIDWAP-NTNRIVTCSVDRNAYVWTQGDDG 440
H + + W+P N N I +CS D VW D G
Sbjct: 78 HKAPCLEVAWSPFNDNVIASCSEDTTCKVWVIPDRG 113
>Z31590-3|CAD27605.1| 607|Caenorhabditis elegans Hypothetical
protein R01H10.3c protein.
Length = 607
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +3
Query: 336 HDLRVMGIDWAP-NTNRIVTCSVDRNAYVWTQGDDG 440
H + + W+P N N I +CS D VW D G
Sbjct: 78 HKAPCLEVAWSPFNDNVIASCSEDTTCKVWVIPDRG 113
>Z31590-2|CAD27604.1| 538|Caenorhabditis elegans Hypothetical
protein R01H10.3b protein.
Length = 538
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +3
Query: 336 HDLRVMGIDWAP-NTNRIVTCSVDRNAYVWTQGDDG 440
H + + W+P N N I +CS D VW D G
Sbjct: 78 HKAPCLEVAWSPFNDNVIASCSEDTTCKVWVIPDRG 113
>Z31590-1|CAA83461.1| 605|Caenorhabditis elegans Hypothetical
protein R01H10.3a protein.
Length = 605
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +3
Query: 336 HDLRVMGIDWAP-NTNRIVTCSVDRNAYVWTQGDDG 440
H + + W+P N N I +CS D VW D G
Sbjct: 78 HKAPCLEVAWSPFNDNVIASCSEDTTCKVWVIPDRG 113
>AF330595-1|AAK00353.1| 510|Caenorhabditis elegans SMU-1 protein.
Length = 510
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Frame = +3
Query: 246 KSNAFSPNNNEVHIYKKEG-NDWKQTNNLVEHDLRVMGIDWAPNTNRIVTCSVDRNAYVW 422
K N+ + H+ + G K + H + + ++ N I++CS D + VW
Sbjct: 317 KDNSHILSGGNDHVVRVHGMKSGKCLKEMRGHSSYITDVRYSDEGNHIISCSTDGSIRVW 376
Query: 423 TQGDDGKWATT 455
G G+ +T
Sbjct: 377 -HGKSGECLST 386
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,625,227
Number of Sequences: 27780
Number of extensions: 368982
Number of successful extensions: 984
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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