Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV021053
(611 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g19835.1 68414.m02487 expressed protein contains Pfam PF05911... 33 0.20
At5g25870.1 68418.m03069 hypothetical protein 31 0.46
At4g38710.1 68417.m05483 glycine-rich protein cylicin II - bovin... 31 0.46
At4g18690.1 68417.m02764 hypothetical protein similar to tumor-r... 31 0.46
At1g11420.1 68414.m01312 agenet domain-containing protein contai... 31 0.60
At5g66030.2 68418.m08315 Golgi-localized GRIP domain-containing ... 31 0.80
At5g66030.1 68418.m08314 Golgi-localized GRIP domain-containing ... 31 0.80
At1g63300.1 68414.m07156 expressed protein similar to Intracellu... 31 0.80
At1g21250.1 68414.m02656 wall-associated kinase 1 (WAK1) identic... 31 0.80
At2g45460.1 68415.m05654 forkhead-associated domain-containing p... 30 1.1
At1g21240.1 68414.m02654 wall-associated kinase, putative simila... 30 1.4
At5g50230.1 68418.m06221 transducin family protein / WD-40 repea... 29 1.8
At2g42880.1 68415.m05309 mitogen-activated protein kinase, putat... 29 1.8
At1g18400.1 68414.m02298 basic helix-loop-helix (bHLH) family pr... 29 1.8
At1g11690.1 68414.m01342 hypothetical protein 29 1.8
At4g31570.1 68417.m04483 expressed protein 29 2.4
At1g65010.1 68414.m07368 expressed protein similar to endosome-a... 29 3.2
At1g03080.1 68414.m00282 kinase interacting family protein simil... 29 3.2
At5g47820.2 68418.m05908 kinesin-like protein (FRA1) identical t... 28 4.2
At5g47820.1 68418.m05907 kinesin-like protein (FRA1) identical t... 28 4.2
At3g20070.2 68416.m02539 expressed protein 28 4.2
At3g20070.1 68416.m02538 expressed protein 28 4.2
At5g62250.1 68418.m07816 microtubule associated protein (MAP65/A... 28 5.6
At5g07660.1 68418.m00877 structural maintenance of chromosomes (... 28 5.6
At4g27595.1 68417.m03964 protein transport protein-related low s... 28 5.6
At1g12150.1 68414.m01407 expressed protein contains Pfam profile... 28 5.6
At4g37130.1 68417.m05258 hydroxyproline-rich glycoprotein family... 27 7.4
At1g73830.1 68414.m08548 basic helix-loop-helix (bHLH) family pr... 27 7.4
At5g60210.1 68418.m07547 cytoplasmic linker protein-related cont... 27 9.8
At5g59390.1 68418.m07442 XH/XS domain-containing protein contain... 27 9.8
>At1g19835.1 68414.m02487 expressed protein contains Pfam PF05911:
Plant protein of unknown function (DUF869)
Length = 982
Score = 32.7 bits (71), Expect = 0.20
Identities = 28/115 (24%), Positives = 54/115 (46%), Gaps = 4/115 (3%)
Frame = +2
Query: 191 KTEQYDRACRSSFKESQSCV*QALGLYAEVNTTLLPDIKLNKLHEDSM----EMNRTIDE 358
K E +C + + +++ + + L AEV + L K N + E + E R+++
Sbjct: 740 KAESNLASCEADLEATKTKLQETEKLLAEVKSDLESAQKSNGMGETQLKCMVESYRSLET 799
Query: 359 KSAELDRLIAENEDTLHNLEEGIRRGRDLLEQGHDRQEELNDLLAKLDELRHKLK 523
+S+EL+ + + + NLE+ + HD +E + LAK EL +L+
Sbjct: 800 RSSELEIELTSLKGKIENLEDEL----------HDEKENHREALAKCQELEEQLQ 844
>At5g25870.1 68418.m03069 hypothetical protein
Length = 173
Score = 31.5 bits (68), Expect = 0.46
Identities = 21/80 (26%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Frame = +2
Query: 302 IKLNKLHEDSMEMNRTIDEKSAELDRLIAENEDTLHNL--EEGIRRGRDLLEQGHDRQEE 475
I+ + +++ +M T DEK E D + + + L E+ + +LL++ HD EE
Sbjct: 18 IETRRENKEMAKMRETSDEKLIEKDEDVTKAGEFKEMLAIEKTWQIWEELLKE-HDEFEE 76
Query: 476 LNDLLAKLDELRHKLKTTWN 535
++++L KL++ ++L+ N
Sbjct: 77 ISEILVKLEKKYYELEEVEN 96
>At4g38710.1 68417.m05483 glycine-rich protein cylicin II - bovine,
PIR2:I46014
Length = 452
Score = 31.5 bits (68), Expect = 0.46
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +1
Query: 367 RAGPFDS*ERRHPSQFRGGHKARSGLAGTRSRQAGGAQRSPR*AG 501
+ G F+S R SQ+ GG + S G R ++G A SP +G
Sbjct: 231 KRGSFESLSRNRDSQYGGGGGSESDTWGRRREESGAANGSPPPSG 275
>At4g18690.1 68417.m02764 hypothetical protein similar to
tumor-related protein [Nicotiana glauca x Nicotiana
langsdorffii] GI:688423
Length = 368
Score = 31.5 bits (68), Expect = 0.46
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = +2
Query: 263 GLYAEVNTTLLPDIKLNKLHEDSMEMNRTIDEKSAELDRLIAENEDTLHNLEEGIRRGRD 442
G +++N + L K+N LH +E I +KSA L +A+ + + G
Sbjct: 133 GSMSDLNASQLA--KINDLHIKVIEKEDKITKKSANLQENVADMPIAIAAYATDLMNGDV 190
Query: 443 LLEQGHDRQEE-LNDLLAKLDELR 511
++E D+ EE + L+ + D+LR
Sbjct: 191 VVEDALDKYEEGMAVLMVEADKLR 214
>At1g11420.1 68414.m01312 agenet domain-containing protein contains
Pfam PF05641: Agenet domain
Length = 604
Score = 31.1 bits (67), Expect = 0.60
Identities = 17/79 (21%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Frame = +2
Query: 293 LPDIKLNKLHEDSMEMNR---TIDEKSAELDRLIAENEDTLHNLEEGIRRGRDLLEQGHD 463
+P +LN L + E+ + + + +D+L+A + L+ +EE +++ +
Sbjct: 469 VPVSQLNSLKDSFSELEKHGFNVTTPLSRIDKLLALKDRQLYIMEELKGFDKEMTNEFSK 528
Query: 464 RQEELNDLLAKLDELRHKL 520
++E +D+ K+ E++HK+
Sbjct: 529 AKQEFDDMEQKILEVKHKI 547
>At5g66030.2 68418.m08315 Golgi-localized GRIP domain-containing
protein contains Pfam profile PF01465: GRIP domain;
supporting cDNA gi|20303028|gb|AF499634.1|
Length = 765
Score = 30.7 bits (66), Expect = 0.80
Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = +2
Query: 197 EQYDRACRSSFKESQSCV*QALGLYAEVNTTLLPDIKLNKLHEDSMEM-NRTIDEKSAEL 373
E + R C + ++++ A G+ E+ L + ++ + HE E+ +R I+EK E+
Sbjct: 541 ETWRRRCEALTAQNEAS--PAEGIEKELENAKLRNKRMKEEHESVRELADRLIEEKDREI 598
Query: 374 DRLIAENEDTLHNLE 418
RL+ E + ++E
Sbjct: 599 SRLVDEMTNLRKSME 613
>At5g66030.1 68418.m08314 Golgi-localized GRIP domain-containing
protein contains Pfam profile PF01465: GRIP domain;
supporting cDNA gi|20303028|gb|AF499634.1|
Length = 788
Score = 30.7 bits (66), Expect = 0.80
Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = +2
Query: 197 EQYDRACRSSFKESQSCV*QALGLYAEVNTTLLPDIKLNKLHEDSMEM-NRTIDEKSAEL 373
E + R C + ++++ A G+ E+ L + ++ + HE E+ +R I+EK E+
Sbjct: 541 ETWRRRCEALTAQNEAS--PAEGIEKELENAKLRNKRMKEEHESVRELADRLIEEKDREI 598
Query: 374 DRLIAENEDTLHNLE 418
RL+ E + ++E
Sbjct: 599 SRLVDEMTNLRKSME 613
>At1g63300.1 68414.m07156 expressed protein similar to Intracellular
protein transport protein USO1 (Swiss-Prot:P25386)
[Saccharomyces cerevisiae]; similar to Myosin II heavy
chain, non muscle (Swiss-Prot:P08799) [Dictyostelium
discoideum]
Length = 1029
Score = 30.7 bits (66), Expect = 0.80
Identities = 20/67 (29%), Positives = 31/67 (46%)
Frame = +2
Query: 338 MNRTIDEKSAELDRLIAENEDTLHNLEEGIRRGRDLLEQGHDRQEELNDLLAKLDELRHK 517
M +DEKS E+D ED NL + I+ ++ +E Q+ L + + LR
Sbjct: 701 MLENLDEKSNEIDNQKRHEEDVTANLNQEIKILKEEIENLKKNQDSLMLQAEQAENLRVD 760
Query: 518 LKTTWNS 538
L+ T S
Sbjct: 761 LEKTKKS 767
>At1g21250.1 68414.m02656 wall-associated kinase 1 (WAK1) identical
to wall-associated kinase 1 [Arabidopsis thaliana]
GI:3549626; expressed in leaves and stems & induced by
pathogen infection (PMID:10380805)
Length = 735
Score = 30.7 bits (66), Expect = 0.80
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Frame = +2
Query: 359 KSAELDRLIAE---NEDTLHNLEEGIRRGRDLLEQGHDRQEELNDLLAKLDELR-HKLKT 526
K LD +I NED L ++E R + + + + ++ AKL+ LR K K
Sbjct: 630 KENRLDEIIGGEVMNEDNLKEIQEAARIAAECTRLMGEERPRMKEVAAKLEALRVEKTKH 689
Query: 527 TWNSREP 547
W+ + P
Sbjct: 690 KWSDQYP 696
>At2g45460.1 68415.m05654 forkhead-associated domain-containing
protein / FHA domain-containing protein
Length = 915
Score = 30.3 bits (65), Expect = 1.1
Identities = 20/63 (31%), Positives = 32/63 (50%)
Frame = +2
Query: 335 EMNRTIDEKSAELDRLIAENEDTLHNLEEGIRRGRDLLEQGHDRQEELNDLLAKLDELRH 514
+M + EKS +++ L+++ EDT L R R L Q + Q D KL+EL
Sbjct: 415 KMKESEKEKSMQVETLMSKLEDTRQRLVCSENRNRLLEAQVSEEQLAFADAQKKLEELDL 474
Query: 515 KLK 523
++K
Sbjct: 475 QVK 477
>At1g21240.1 68414.m02654 wall-associated kinase, putative similar
to wall-associated kinase 1 [Arabidopsis thaliana]
GI:3549626; expressed in leaves and stems & induced by
salicylic acid or INA (PMID:10380805)
Length = 741
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +2
Query: 392 NEDTLHNLEEGIRRGRDLLEQGHDRQEELNDLLAKLDELR-HKLKTTWNSREP 547
NED L ++E R + + + + ++ AKL+ LR K K W+ + P
Sbjct: 650 NEDNLKEIQEAARIAAECTRLMGEERPRMKEVAAKLEALRVEKTKHKWSDQYP 702
>At5g50230.1 68418.m06221 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to TIPD PROTEIN (SP:O15736)[Dictyostelium
discoideum]
Length = 515
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 305 KLNKLHEDSMEMNRTIDEKSAELDRLIAENEDTLHNLEE 421
+L + ED + ++EK+ +D LIAEN + LEE
Sbjct: 105 ELTQRREDCTRLQEELEEKTKTVDVLIAENLEIRSQLEE 143
>At2g42880.1 68415.m05309 mitogen-activated protein kinase, putative
/ MAPK, putative (MPK20) mitogen-activated protein
kinase (MAPK)(AtMPK20), PMID:12119167
Length = 606
Score = 29.5 bits (63), Expect = 1.8
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = +3
Query: 27 AEKLENEARNIRDIADKAFNSSLVANKIAKDGINKQANISNEVQILTNELNAASG 191
A ++ R D+A N+ + +A+ G+NK NIS+ + I TN L A +G
Sbjct: 524 ARQISQYNRYAPDVAINIDNNPFI---MARTGMNKAENISDRIIIDTNLLQATAG 575
>At1g18400.1 68414.m02298 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 260
Score = 29.5 bits (63), Expect = 1.8
Identities = 21/78 (26%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Frame = +3
Query: 18 RLLAEKLENEARNIRDIADKAFNSSLVANKIAKDGINKQANISNEVQILTNELNAASG-- 191
R+ K+ R ++D+ + + +A + + IN ++ N+V+ L+ +L AAS
Sbjct: 161 RVRRGKINERLRCLQDMVPGCYKAMGMATML-DEIINYVQSLQNQVEFLSMKLTAASSFY 219
Query: 192 KLNSMTELADQALKRARA 245
NS T+ D +++RA+A
Sbjct: 220 DFNSETDAVD-SMQRAKA 236
>At1g11690.1 68414.m01342 hypothetical protein
Length = 247
Score = 29.5 bits (63), Expect = 1.8
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Frame = +2
Query: 275 EVNTTLLPDIKLNKLHEDSMEMNRTIDEKSAELDRLIAENEDTLHNLEEGIRRGRDLLEQ 454
E T D KL ++ E R E S L + I + E +++ L RR RD +E+
Sbjct: 75 EETTNPFVDYLKEKLSKEREEKKRVKAENS-RLKKKILDMESSVNRL----RRERDTMEK 129
Query: 455 GHDRQEELNDLLAKLDELRHKLKTTWN-SREPR*QLQM 565
+L+ ++DEL+ + W+ + E R LQM
Sbjct: 130 ------VCEELVTRIDELKVNTRRVWDETEEERQMLQM 161
>At4g31570.1 68417.m04483 expressed protein
Length = 2712
Score = 29.1 bits (62), Expect = 2.4
Identities = 21/89 (23%), Positives = 42/89 (47%)
Frame = +2
Query: 314 KLHEDSMEMNRTIDEKSAELDRLIAENEDTLHNLEEGIRRGRDLLEQGHDRQEELNDLLA 493
+LHE ++ NRT +E ++ A + +L+ R RD+ Q++L L+
Sbjct: 2290 ELHEKDIQNNRTCNELVGQVKEAQAGAKIFAEDLQSASARMRDM-------QDQLGILVR 2342
Query: 494 KLDELRHKLKTTWNSREPR*QLQMRFTRL 580
+ D ++ ++K + +LQ + T L
Sbjct: 2343 ERDSMKERVKELLAGQASHSELQEKVTSL 2371
>At1g65010.1 68414.m07368 expressed protein similar to
endosome-associated protein (GI:1016368) [Homo sapiens];
similar to Centromeric protein E (CENP-E protein)
(Swiss-Prot:Q02224) [Homo sapiens]
Length = 1318
Score = 28.7 bits (61), Expect = 3.2
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Frame = +2
Query: 275 EVNTTLLPDIK-LNKLHEDSMEMNRTIDEKSAELDRLIAENEDTLHNLEEGIRRGRDLLE 451
E T L I+ L+KLHE + + + E + L L +EE + DLL
Sbjct: 876 ERETAYLKKIEELSKLHEILSDQETKLQISNHEKEELKERETAYLKKIEELSKVQEDLL- 934
Query: 452 QGHDRQEELNDLLAKLDELRHK 517
+++ EL+ ++ ++++LR K
Sbjct: 935 ---NKENELHGMVVEIEDLRSK 953
>At1g03080.1 68414.m00282 kinase interacting family protein similar to
kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 1744
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/65 (23%), Positives = 34/65 (52%)
Frame = +2
Query: 254 QALGLYAEVNTTLLPDIKLNKLHEDSMEMNRTIDEKSAELDRLIAENEDTLHNLEEGIRR 433
Q+ L+ E+ + + + L L + +E + ++ +S DR I + + ++NLE+ +
Sbjct: 1322 QSATLFGELQISAVHETLLEGLTNELVEACKNLESRSTLKDREIEQLKGRVNNLEDANKG 1381
Query: 434 GRDLL 448
DL+
Sbjct: 1382 QNDLM 1386
>At5g47820.2 68418.m05908 kinesin-like protein (FRA1) identical to
kinesin-like protein [Arabidopsis thaliana] GI:27260890;
contains Pfam profile PF00225: Kinesin motor domain
Length = 1035
Score = 28.3 bits (60), Expect = 4.2
Identities = 16/66 (24%), Positives = 36/66 (54%)
Frame = +2
Query: 311 NKLHEDSMEMNRTIDEKSAELDRLIAENEDTLHNLEEGIRRGRDLLEQGHDRQEELNDLL 490
N + ++ E+NR ++EK +E+ + + D + ++ ++ ++ QEE N LL
Sbjct: 505 NSMDKELYELNRRLEEKESEMK--LFDGYDPAALKQHFGKKIAEVEDEKRSVQEERNRLL 562
Query: 491 AKLDEL 508
A+++ L
Sbjct: 563 AEIENL 568
>At5g47820.1 68418.m05907 kinesin-like protein (FRA1) identical to
kinesin-like protein [Arabidopsis thaliana] GI:27260890;
contains Pfam profile PF00225: Kinesin motor domain
Length = 1035
Score = 28.3 bits (60), Expect = 4.2
Identities = 16/66 (24%), Positives = 36/66 (54%)
Frame = +2
Query: 311 NKLHEDSMEMNRTIDEKSAELDRLIAENEDTLHNLEEGIRRGRDLLEQGHDRQEELNDLL 490
N + ++ E+NR ++EK +E+ + + D + ++ ++ ++ QEE N LL
Sbjct: 505 NSMDKELYELNRRLEEKESEMK--LFDGYDPAALKQHFGKKIAEVEDEKRSVQEERNRLL 562
Query: 491 AKLDEL 508
A+++ L
Sbjct: 563 AEIENL 568
>At3g20070.2 68416.m02539 expressed protein
Length = 282
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/56 (25%), Positives = 29/56 (51%)
Frame = +2
Query: 308 LNKLHEDSMEMNRTIDEKSAELDRLIAENEDTLHNLEEGIRRGRDLLEQGHDRQEE 475
+ KL + + + D+K E +L+ E E +L E + + ++L+++ H R E
Sbjct: 59 VEKLRNEIISIRSGRDDKFLECQKLLMEEELKNKSLSEEVVKLKELVQEEHPRNYE 114
>At3g20070.1 68416.m02538 expressed protein
Length = 282
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/56 (25%), Positives = 29/56 (51%)
Frame = +2
Query: 308 LNKLHEDSMEMNRTIDEKSAELDRLIAENEDTLHNLEEGIRRGRDLLEQGHDRQEE 475
+ KL + + + D+K E +L+ E E +L E + + ++L+++ H R E
Sbjct: 59 VEKLRNEIISIRSGRDDKFLECQKLLMEEELKNKSLSEEVVKLKELVQEEHPRNYE 114
>At5g62250.1 68418.m07816 microtubule associated protein
(MAP65/ASE1) family protein low similarity to protein
regulating cytokinesis 1 (PRC1) [Homo sapiens]
GI:2865521; contains Pfam profile PF03999: Microtubule
associated protein (MAP65/ASE1 family)
Length = 549
Score = 27.9 bits (59), Expect = 5.6
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +2
Query: 335 EMNRTIDEKSAELDRLIAENEDTLHNLEEGIRRGRDLLEQGHDRQEELNDLLAKLDEL 508
E+N D+++ D E++ +L LEE R L EQ +R +++ D + L+ L
Sbjct: 138 EINGESDDETCSSDFSADESDLSLRKLEELHRELYTLQEQKRNRVKQIQDNIRTLESL 195
>At5g07660.1 68418.m00877 structural maintenance of chromosomes
(SMC) family protein similar to SMC-like protein (MIM)
[Arabidopsis thaliana] GI:5880614; contains Pfam profile
PF02463: RecF/RecN/SMC N terminal domain
Length = 1058
Score = 27.9 bits (59), Expect = 5.6
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Frame = +2
Query: 284 TTLLPDIKLNKLHEDSMEMNRTIDEKSAELDRL--------IAENE--DTLHNLEEGIRR 433
T P +N+LH + M+ + I+EK + L++L + NE + NL E +
Sbjct: 708 TKASPTSSVNELHLEIMKFQKEIEEKESLLEKLQDSLKEAELKANELKASYENLYESAKG 767
Query: 434 GRDLLEQGHDRQEELNDLL 490
+ LE+ D +E D L
Sbjct: 768 EIEALEKAEDELKEKEDEL 786
>At4g27595.1 68417.m03964 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 1212
Score = 27.9 bits (59), Expect = 5.6
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Frame = +2
Query: 326 DSMEMNRTIDEKSAELDRLIAENEDTLHNLE----EGIRRGRDLLEQGHDRQEELNDLLA 493
DSM++ ++ EK EL AEN L +E + I + + E D++ +L +++
Sbjct: 610 DSMKLKESLVEKEDELKNTAAENR-KLREMEVSSIDKIDQLSKVKESLVDKETKLQNIIQ 668
Query: 494 KLDELRHK 517
+ +ELR K
Sbjct: 669 EAEELRVK 676
>At1g12150.1 68414.m01407 expressed protein contains Pfam profile
PF05701: Plant protein of unknown function (DUF827);
expression supported by MPSS
Length = 548
Score = 27.9 bits (59), Expect = 5.6
Identities = 17/67 (25%), Positives = 31/67 (46%)
Frame = +3
Query: 12 ESRLLAEKLENEARNIRDIADKAFNSSLVANKIAKDGINKQANISNEVQILTNELNAASG 191
E +LL + E E R + K ++ + ++ + N V+I+TNELN A+
Sbjct: 253 EKKLLVLRKEYEPELSRTLEAKLLETTSEIEVLREEMKKAHESEMNTVKIITNELNEATM 312
Query: 192 KLNSMTE 212
+L +
Sbjct: 313 RLQEAAD 319
>At4g37130.1 68417.m05258 hydroxyproline-rich glycoprotein family
protein
Length = 513
Score = 27.5 bits (58), Expect = 7.4
Identities = 18/72 (25%), Positives = 31/72 (43%)
Frame = +2
Query: 155 SDPNERTQCGFGKTEQYDRACRSSFKESQSCV*QALGLYAEVNTTLLPDIKLNKLHEDSM 334
S P ++ Q + +Q+ + + ++ Q V Q L L+ K LH DS
Sbjct: 58 SQPQQQQQTSLFQPQQFQQQQQQLNQQQQQQVQQQLYLFTNDKAPANYSTKWADLHPDSQ 117
Query: 335 EMNRTIDEKSAE 370
++ I+EK E
Sbjct: 118 KLLLQIEEKILE 129
>At1g73830.1 68414.m08548 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 261
Score = 27.5 bits (58), Expect = 7.4
Identities = 20/78 (25%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Frame = +3
Query: 18 RLLAEKLENEARNIRDIADKAFNSSLVANKIAKDGINKQANISNEVQILTNELNAASG-- 191
R+ K+ + ++DI + + +A + + IN ++ N+V+ L+ +L AAS
Sbjct: 163 RVRRGKINERLKCLQDIVPGCYKTMGMATML-DEIINYVQSLQNQVEFLSMKLTAASSYY 221
Query: 192 KLNSMTELADQALKRARA 245
NS T+ A +++++A+A
Sbjct: 222 DFNSETD-AVESMQKAKA 238
>At5g60210.1 68418.m07547 cytoplasmic linker protein-related
contains weak similarity to cytoplasmic linker protein
CLIP-170 (GI:2905649) [Gallus gallus]
Length = 588
Score = 27.1 bits (57), Expect = 9.8
Identities = 18/65 (27%), Positives = 31/65 (47%)
Frame = +2
Query: 326 DSMEMNRTIDEKSAELDRLIAENEDTLHNLEEGIRRGRDLLEQGHDRQEELNDLLAKLDE 505
+S EM+ + E++RL A E + +EG L + Q EL +++DE
Sbjct: 337 ESNEMDEEVSSLRCEVERLRAALEASDKKDQEGNVEASSRLRIQAELQSELKIAKSEIDE 396
Query: 506 LRHKL 520
L+ +L
Sbjct: 397 LKARL 401
>At5g59390.1 68418.m07442 XH/XS domain-containing protein contains
Pfam domain PF03469: XH domain and PF03468: XS domain
Length = 561
Score = 27.1 bits (57), Expect = 9.8
Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Frame = +2
Query: 308 LNKLHEDSMEMNRTIDEKSAELDRLIAENEDTLHNLEEGIRRGRDLLEQGHDRQEELND- 484
+ K + E+ + +DE S L+ L N N +EG ++ + +E+ + + + ++
Sbjct: 183 IEKKKQSKQELEQKVDETSRFLESLELHNVLLNKNYQEGFQKMQMKMEELYQQVLDGHEK 242
Query: 485 LLAKLDELRHKL 520
LA+L+ R KL
Sbjct: 243 SLAELEAKREKL 254
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,273,393
Number of Sequences: 28952
Number of extensions: 179275
Number of successful extensions: 706
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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