Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021052
         (802 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   2.8  
EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive pep...    22   6.5  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   6.5  
EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive pep...    21   8.7  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 709 GCSFSFEAMNLRTSPATSCDP 647
           GCS++ E  + R  PA   DP
Sbjct: 407 GCSYTGEQKSRRKGPAFKVDP 427


>EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive
           peptide receptor 2 protein.
          Length = 354

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -3

Query: 506 LCWSSFIVF 480
           LCWS +IVF
Sbjct: 297 LCWSPYIVF 305


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
 Frame = +3

Query: 567  YATLYLEQ-GFDVLSVSCTPWQLMWPMKGSQLVAGDVLK 680
            + T Y E      L+V   P  + W +KG Q    D ++
Sbjct: 1316 FTTTYKEDVTLPCLAVGLPPPVITWKIKGVQFTTSDKIR 1354


>EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive
           peptide receptor 1 protein.
          Length = 374

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -3

Query: 506 LCWSSFIVF 480
           LCWS +I+F
Sbjct: 262 LCWSPYIIF 270


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,689
Number of Sequences: 336
Number of extensions: 4142
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21791490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)