Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021052
         (802 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma...    31   0.19 
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom...    29   0.58 
SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|...    26   5.4  

>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 535

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +2

Query: 410 LIPRTSRRTFNTLATRKSN*QRIRKQ*NWTSKEQASLHNDQLATGPTEARYEIRDA 577
           L P    R F ++   K+   R+    +WTS        ++  TGP+ +RYE++ A
Sbjct: 405 LSPLGINRIFGSIFMGKTRQDRVYGMYSWTSDRWVKSKIEESLTGPSFSRYELQSA 460


>SPCC63.03 |||DNAJ domain protein, DNAJC11
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 642

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = +1

Query: 667 VTFSNSWLRT--RMSSP-SWCTGFSIAGYMWGEVYCTS*IIG 783
           +TFS +W R   ++S P  WC+ F  +   WG V+  + I+G
Sbjct: 418 ITFSLNWSRLGQKISLPIMWCSVFDRSAVFWGLVFPITSILG 459


>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 417 PGHHEEHS-IH*QRESQTNNGSENNETGPAKSRPLC 521
           P HH+EH   H   E  +++ S ++E    K +P C
Sbjct: 52  PRHHKEHKKSHHHWEYSSDDDSSDDEESCEKKKPKC 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,168,092
Number of Sequences: 5004
Number of extensions: 63649
Number of successful extensions: 175
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)